erinhwilson / dna-pytorch-tutorial
a super basic tutorial on how to create a pytorch models for raw DNA sequences
☆20Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for dna-pytorch-tutorial
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery☆20Updated last month
- Testing if UMAP/tSNE overfit their intrinsic dimensionality☆13Updated last year
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆69Updated last year
- ☆19Updated last year
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆33Updated 5 months ago
- Coherent Deconfounding Autoencoder (CODE-AE) can extract both common biological signals shared by incoherent samples and private represen…☆16Updated last month
- ☆17Updated 2 months ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆18Updated last month
- Template for creating a BioCypher-driven knowledge graph☆11Updated last month
- Tools for building and manipulating graphs in Python☆41Updated last year
- GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data☆27Updated this week
- Biological Network Integration using Convolutions☆59Updated 9 months ago
- Python toolbox for multi-omics data mapping and analysis☆19Updated last year
- Similarity search in heterogeneous knowledge graphs using meta paths.☆24Updated last year
- code for Gogleva et al manuscript☆45Updated last year
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆22Updated last month
- Code for the analyses in the human reference interactome paper.☆26Updated last year
- Here I explain the math behind UMAP and show how to program it from scratch in Python☆38Updated 3 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆48Updated last month
- ☆14Updated last week
- ☆16Updated 3 years ago
- Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…☆17Updated last year
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆31Updated 4 months ago
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆28Updated 8 months ago
- ☆10Updated 3 years ago
- Pandas ExtensionDtypes for dealing with genomics data☆47Updated last week
- SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases☆45Updated 2 months ago
- A data analysis package for high-dimensional, multi-block data.☆12Updated 2 years ago