erinhwilson / dna-pytorch-tutorial
a super basic tutorial on how to create a pytorch models for raw DNA sequences
☆20Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for dna-pytorch-tutorial
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery☆20Updated last month
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆69Updated last year
- GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data☆28Updated 2 weeks ago
- Tools for building and manipulating graphs in Python☆41Updated last year
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆33Updated 5 months ago
- Biological Network Integration using Convolutions☆59Updated 10 months ago
- SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases☆46Updated 2 months ago
- ☆54Updated 2 months ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆25Updated 7 months ago
- A deep-learning framework for multi-omics integration☆24Updated last year
- SUPREME: A GCN based approach for cancer subtype prediction☆18Updated last year
- Interpretable splicing model☆19Updated last year
- Creating multi-resolution embeddings and clusters from high dimensional data☆48Updated last month
- Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…☆17Updated last year
- 🪝 What's the latest version for each database?☆26Updated this week
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Updated 3 years ago
- ☆15Updated 2 weeks ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆18Updated last month
- A spectral method for assessing and combining multiple data visualizations☆48Updated last year
- Testing if UMAP/tSNE overfit their intrinsic dimensionality☆13Updated last year
- The first GANs-based omics-to-omics translation framework☆11Updated last year
- Python toolbox for multi-omics data mapping and analysis☆19Updated last year
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆22Updated last month
- Similarity search in heterogeneous knowledge graphs using meta paths.☆24Updated last year
- A flux balance analysis machine learning classifier for microbial GWAS☆13Updated 4 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated this week
- ☆17Updated 2 months ago
- Network-based project to explore gene connectivity through biological scales☆22Updated last month
- Here I explain the math behind UMAP and show how to program it from scratch in Python☆38Updated 3 years ago