mims-harvard / SHEPHERDLinks
SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
☆56Updated 10 months ago
Alternatives and similar repositories for SHEPHERD
Users that are interested in SHEPHERD are comparing it to the libraries listed below
Sorting:
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆70Updated 3 months ago
- A resource of adverse drug effects extracted from FDA structured product labels☆78Updated last week
- Biological Network Integration using Convolutions☆62Updated last year
- Network-based project to explore gene connectivity through biological scales☆23Updated 8 months ago
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆59Updated this week
- Framework for Interpretable Neural Networks☆105Updated 3 months ago
- ☆67Updated last year
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆110Updated 3 years ago
- CpGPT: a Foundation Model for DNA Methylation.☆43Updated last week
- ☆45Updated 2 weeks ago
- A curated list of biomedical knowledge graphs and of resources for their construction.☆50Updated 8 months ago
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆119Updated 3 years ago
- ☆27Updated last week
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆49Updated 6 months ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆29Updated 3 months ago
- Simulate patients with rare genetic conditions☆22Updated last year
- Create cell sentences from sequencing data☆22Updated 10 months ago
- P-NET, Biologically informed deep neural network for prostate cancer classification and discovery☆152Updated 3 years ago
- federated learning with tabular learning☆20Updated 3 months ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆55Updated last month
- ☆114Updated 2 months ago
- MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations☆80Updated 8 months ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 5 months ago
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆17Updated last year
- Knowledge-primed neural networks☆38Updated 2 years ago
- Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Nat…☆96Updated 3 years ago
- TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design☆211Updated last year
- BulkRNABert: Cancer prognosis from bulk RNA-seq based language models☆25Updated last week
- Backend library for conversational AI in biomedicine☆168Updated last week