mims-harvard / SHEPHERD
SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
☆49Updated 5 months ago
Alternatives and similar repositories for SHEPHERD:
Users that are interested in SHEPHERD are comparing it to the libraries listed below
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆50Updated 2 weeks ago
- A resource of adverse drug effects extracted from FDA structured product labels☆64Updated last month
- ☆19Updated last week
- Network-based project to explore gene connectivity through biological scales☆23Updated 3 months ago
- Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆40Updated last month
- Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Nat…☆95Updated 3 years ago
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆113Updated 2 years ago
- Unified Clinical Vocabulary Embeddings for Advancing Precision Medicine☆45Updated last month
- ☆65Updated last year
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆109Updated 2 years ago
- MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations☆71Updated 3 months ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆19Updated 3 months ago
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery☆21Updated 3 months ago
- Biological Network Integration using Convolutions☆60Updated last year
- ☆33Updated last year
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆45Updated last month
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- Multi-omics integration method using AE and GCN☆33Updated last year
- Cell2Sentence turns scRNA-seq data into text for LLM training.☆84Updated 4 months ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Updated 3 years ago
- Framework for Interpretable Neural Networks☆99Updated this week
- AIONER☆48Updated 6 months ago
- ☆64Updated last year
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆23Updated last month
- A deep-learning framework for multi-omics integration☆24Updated last year
- Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…☆16Updated 4 years ago
- benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, p…☆107Updated 6 months ago
- code for Gogleva et al manuscript☆45Updated 2 years ago
- TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design☆175Updated 8 months ago
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆16Updated 9 months ago