SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
☆78Jul 1, 2025Updated 8 months ago
Alternatives and similar repositories for SHEPHERD
Users that are interested in SHEPHERD are comparing it to the libraries listed below
Sorting:
- Simulate patients with rare genetic conditions☆24Jul 28, 2023Updated 2 years ago
- A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology☆28Mar 9, 2025Updated 11 months ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆33Apr 17, 2024Updated last year
- Similarity search in heterogeneous knowledge graphs using meta paths.☆30Mar 11, 2023Updated 2 years ago
- This repository contain a dataset describing the urgency of admission among COVID-19 patients, intended for use in a predictive modeling …☆10Mar 16, 2020Updated 5 years ago
- Implementation of the BLUE benchmark with Transformers.☆20Feb 16, 2024Updated 2 years ago
- source for paper DGNN-DDI☆11Oct 8, 2023Updated 2 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- Zero-shot clinical trial matching with LLMs☆15Mar 1, 2025Updated last year
- Official source code for Time is Not Enough: Time-Frequency based Explanation for Time-Series Black-Box Models☆12Dec 5, 2024Updated last year
- ☆13Feb 26, 2026Updated last week
- Simple implementations of attention modules adapted for the biological data domain.☆14May 20, 2025Updated 9 months ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Oct 6, 2025Updated 5 months ago
- Machine Learning module for cloud-based analyses developed as part of the NIGMS Sandbox Project☆18Jun 6, 2025Updated 9 months ago
- A combined deep learning tool for automated recognition of human phenotype ontology☆27Nov 29, 2022Updated 3 years ago
- EMNLP'22 | PromptEHR: Conditional Electronic Healthcare Records Generation with Prompt Learning☆32Jun 8, 2023Updated 2 years ago
- Optimizing Review Generation Through Prompt Generation☆15Apr 15, 2024Updated last year
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago
- Clean repository for the Cambridge COVID-19 ICU simulation☆12Mar 29, 2020Updated 5 years ago
- Official code and dataset for our NAACL 2024 paper: DialogCC: An Automated Pipeline for Creating High-Quality Multi-modal Dialogue Datase…☆13Jun 24, 2024Updated last year
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆33Mar 13, 2025Updated 11 months ago
- Dataset for medical question summarization introduced in the ACL 2019 paper "On the Summarization of Consumer Health Questions" (A. Ben A…☆32Jan 27, 2023Updated 3 years ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Jan 20, 2022Updated 4 years ago
- This page hosts NeKo, a python package that allow the user to automatically build gene regulatory networks from any databases.☆17Feb 23, 2026Updated last week
- ☆14Mar 31, 2025Updated 11 months ago
- ☆63Jul 4, 2023Updated 2 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆210Jun 6, 2025Updated 9 months ago
- PMC-Patients☆102Jun 7, 2024Updated last year
- Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for v…☆20Feb 18, 2026Updated 2 weeks ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Mar 16, 2021Updated 4 years ago
- python implementation of the PAGE algorithm☆21Feb 15, 2026Updated 2 weeks ago
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆74Dec 20, 2023Updated 2 years ago
- ☆17Oct 24, 2020Updated 5 years ago
- A software tool for personalized and allele-specific CRISPR editing.☆18Feb 1, 2022Updated 4 years ago
- Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs☆29Dec 8, 2025Updated 2 months ago
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 7 years ago
- Path to Medical AGI: Unify Domain-specific Medical LLMs with the Lowest Cost☆39Jun 21, 2023Updated 2 years ago
- A collection of useful functions for bioinformatics data analysis☆25Feb 5, 2026Updated last month
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆19Oct 18, 2019Updated 6 years ago