Alternatives and similar repositories for STREAMLINE:

Users that are interested in STREAMLINE are comparing it to the libraries listed below

• krassowski / easy-entrez
  Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …
  ☆77Updated last year
• tatonetti-lab / onsides
  A resource of adverse drug effects extracted from FDA structured product labels
  ☆75Updated this week
• GenoML / genoml2
  GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data
  ☆31Updated 5 months ago
• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆29Updated last year
• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆26Updated last year
• jvfe / pytrials
  Python package that wraps around the ClinicalTrials.gov API
  ☆53Updated 11 months ago
• gerstung-lab / Delphi
  Modelling human health trajectories using generative transformers
  ☆25Updated this week
• MASILab / pyPheWAS
  MASI Lab Implementation of PheWAS in Python
  ☆28Updated 5 months ago
• RuishanLiu / TrialPathfinder
  ☆61Updated 3 years ago
• spiros / tofu
  Tofu is a Python tool for generating synthetic UK Biobank data.
  ☆58Updated last year
• unmtransinfo / ProteinGraphML
  Protein Graph in Python for MetaPath-ML and more.
  ☆19Updated 3 years ago
• JonnyTran / OpenOmics
  A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
  ☆32Updated 9 months ago
• BenGlicksberg / PatientExploreR
  Dynamic visualization of Electronic Health Record data in the OMOP framework
  ☆28Updated 3 years ago
• RuishanLiu / precision-cancer
  ☆13Updated 2 years ago
• insitro / EmbedGEM
  EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery
  ☆21Updated 6 months ago
• biocypher / project-template
  Template for creating a BioCypher-driven knowledge graph
  ☆12Updated 4 months ago
• CutillasLab / DRUMLR
  ☆10Updated 3 years ago
• mims-harvard / Clinical-knowledge-embeddings
  Unified Clinical Vocabulary Embeddings for Advancing Precision Medicine
  ☆53Updated 4 months ago
• mims-harvard / SHEPHERD
  SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
  ☆53Updated 7 months ago
• snap-stanford / planet
  PlaNet: Predicting population response to drugs via clinical knowledge graph
  ☆25Updated last month
• Novartis / ChemBioMultimodalAutoencoders
  a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures
  ☆28Updated last year
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆31Updated last year
• AstraZeneca / skywalkR
  code for Gogleva et al manuscript
  ☆45Updated 2 years ago
• rezacsedu / XAI-for-bioinformatics
  Explainable AI for Bioinformatics
  ☆123Updated 2 years ago
• BorgwardtLab / maldi_amr
  Code for the paper "Antimicrobial resistance prediction in clinical isolates through machine learning on MALDI-TOF mass spectra"
  ☆41Updated 2 years ago
• biocypher / biochatter-light
  The light frontend for BioChatter, in pure Python
  ☆54Updated this week
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated this week
• nh2tran / DeepNovoAA
  DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.
  ☆11Updated 4 years ago
• dhimmel / lincs
  Library of Integrated Cellular Signatures L1000
  ☆31Updated 3 years ago
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆42Updated this week