Python script that downloads all pubmed abstracts corresponding to user-specified keyword searches, by performing automated NCBI E-utility queries
☆32Mar 15, 2020Updated 6 years ago
Alternatives and similar repositories for pubmed-abstract-compiler
Users that are interested in pubmed-abstract-compiler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R client for the bioRxiv API (https://api.biorxiv.org/)☆15May 18, 2021Updated 4 years ago
- BioMedBERT: A Pre-trained Biomedical Language Model for QA and IR☆33Feb 9, 2021Updated 5 years ago
- ViroBLAST standalone package☆16Apr 4, 2024Updated 2 years ago
- Calculate circos format data of GC content and GC skew from genome data.☆12Sep 20, 2025Updated 7 months ago
- ☆11May 12, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Simulation toolbox for structural variations.☆10May 30, 2019Updated 6 years ago
- A fork for the old hhsuite-2.0.16☆13Nov 27, 2020Updated 5 years ago
- Django website project for common sequence search tools.☆17Apr 9, 2026Updated last month
- GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.☆11Mar 22, 2024Updated 2 years ago
- A quick recap of widely used differential analyses methods in R for RNA-seq experiments☆16Dec 7, 2024Updated last year
- A Tidy Interface for Simulating Multivariate Data☆12Aug 27, 2023Updated 2 years ago
- Reference server implementation for the GA4GH HTSget API standard.☆12Apr 8, 2026Updated last month
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- MVP (Qi et al 2021) source code☆17May 11, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Jan 11, 2021Updated 5 years ago
- A public repo to share methylation risk scores (MRS) derived from UCLA's electronic health records.☆11Aug 25, 2022Updated 3 years ago
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 9 years ago
- ☆12Sep 21, 2023Updated 2 years ago
- High quality visualization for volumetric image data☆60May 3, 2026Updated last week
- S2F: protein function without experiments☆16Nov 24, 2025Updated 5 months ago
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Load Google's pre-trained Word2Vec model using gensim APIs☆13Jun 9, 2017Updated 8 years ago
- Full-Length RNA Analysis pipeline developted by BGI RD group.☆19Sep 2, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆19Mar 23, 2020Updated 6 years ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆17Nov 6, 2024Updated last year
- Tool that converts between BioC XML files and BioC JSON files☆19Jan 10, 2017Updated 9 years ago
- ☆18Apr 11, 2026Updated 3 weeks ago
- ☆17Jan 5, 2021Updated 5 years ago
- Noise Reduction Methods for Distantly Supervised Biomedical Relation Extraction☆11Oct 25, 2017Updated 8 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Jan 7, 2020Updated 6 years ago
- Programmer Dvorak layout with the typical keypad layout instead of the modified one by Roland Kaufmann.☆17Mar 31, 2020Updated 6 years ago
- new repo☆28May 18, 2021Updated 4 years ago
- ☆20Dec 20, 2022Updated 3 years ago
- Data and codes for BioBERT-MRC☆11Oct 5, 2021Updated 4 years ago
- ☆22Jan 13, 2017Updated 9 years ago
- Earth observations, especially satellite data, have produced a wealth of methods and results in meeting global challenges, often presente…☆12Sep 22, 2022Updated 3 years ago