Python script that downloads all pubmed abstracts corresponding to user-specified keyword searches, by performing automated NCBI E-utility queries
☆32Mar 15, 2020Updated 6 years ago
Alternatives and similar repositories for pubmed-abstract-compiler
Users that are interested in pubmed-abstract-compiler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code repository associated with the FedECA article☆15Jul 7, 2026Updated 3 months ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Jul 12, 2021Updated 5 years ago
- BioMedBERT: A Pre-trained Biomedical Language Model for QA and IR☆34Feb 9, 2021Updated 5 years ago
- Automatic Input Documentation for WDL workflows☆12Sep 5, 2024Updated 2 years ago
- Data science in R notes☆15Oct 3, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Nov 18, 2023Updated 2 years ago
- Calculate circos format data of GC content and GC skew from genome data.☆12Sep 20, 2025Updated last year
- PLS-PM estimation and prediction library☆10Jun 29, 2018Updated 8 years ago
- A public repo to share methylation risk scores (MRS) derived from UCLA's electronic health records.☆11Aug 25, 2022Updated 4 years ago
- A fork for the old hhsuite-2.0.16☆13Nov 27, 2020Updated 5 years ago
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Dec 21, 2019Updated 6 years ago
- Django website project for common sequence search tools.☆16Apr 9, 2026Updated 6 months ago
- A Tidy Interface for Simulating Multivariate Data☆12Aug 27, 2023Updated 3 years ago
- Multi-Teacher Distillation for Protein embedding☆13May 31, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- A quick recap of widely used differential analyses methods in R for RNA-seq experiments☆16Dec 7, 2024Updated last year
- S2F: protein function without experiments☆15Nov 24, 2025Updated 10 months ago
- Analysis of Ebola virus genomes☆17May 18, 2015Updated 11 years ago
- ☆13Sep 21, 2023Updated 3 years ago
- Differential Correlation across Ranked Samples☆13May 31, 2023Updated 3 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆19Mar 23, 2020Updated 6 years ago
- FUSE filesystem for the DNAnexus storage system☆13Apr 24, 2026Updated 5 months ago
- GTM and t-SNE classification and clustering of 1000 Genomes Project populations☆13Feb 18, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tool that converts between BioC XML files and BioC JSON files☆19Jan 10, 2017Updated 9 years ago
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆20May 26, 2025Updated last year
- Write PubMed search results with two display options (citation or listview) to PDF or Word☆13Oct 18, 2020Updated 5 years ago
- Unsupervised neural network for learning embeddings of GO terms.☆21Feb 19, 2022Updated 4 years ago
- ☆17Jan 5, 2021Updated 5 years ago
- ☆10Jan 7, 2020Updated 6 years ago
- Lossless VCF compression☆22Mar 4, 2022Updated 4 years ago
- ☆24Jun 9, 2017Updated 9 years ago
- ☆26Nov 21, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Data and codes for BioBERT-MRC☆11Oct 5, 2021Updated 5 years ago
- Earth observations, especially satellite data, have produced a wealth of methods and results in meeting global challenges, often presente…☆12Sep 22, 2022Updated 4 years ago
- Programmer Dvorak layout with the typical keypad layout instead of the modified one by Roland Kaufmann.☆17Mar 31, 2020Updated 6 years ago
- ☆26Feb 7, 2022Updated 4 years ago
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated 6 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆34Apr 1, 2026Updated 6 months ago
- Model for taxonomy classification☆16May 28, 2021Updated 5 years ago