erilu / pubmed-abstract-compiler
Python script that downloads all pubmed abstracts corresponding to user-specified keyword searches, by performing automated NCBI E-utility queries
☆30Updated 4 years ago
Alternatives and similar repositories for pubmed-abstract-compiler:
Users that are interested in pubmed-abstract-compiler are comparing it to the libraries listed below
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 4 years ago
- ☆77Updated 2 months ago
- This package helps wrangle the clinical data in IBD Plexus. IBD Plexus is a data exchange platform designed to accelerate research toward…☆12Updated last month
- Framework for Interpretable Neural Networks☆99Updated 2 weeks ago
- ☆31Updated 3 years ago
- Porting DESeq2 into python via rpy2☆68Updated last year
- ☆31Updated last month
- Clinical interpretation of somatic mutations in cancer☆44Updated this week
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆88Updated last month
- What you need to process the Quarterly DepMap-Omics releases from Terra☆114Updated last week
- Programming for Biology Class @ CSHL 2022☆12Updated 4 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆41Updated last week
- Python packaging for CPTAC data☆94Updated 7 months ago
- ☆72Updated 3 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- Functional Associations using Variational Autoencoders☆39Updated 2 weeks ago
- TCGA-Assembler 2☆75Updated 6 years ago
- Documentation and tutorials on using GCP for biomedical research☆25Updated last month
- MyGene.info: A BioThings API for gene annotations☆123Updated last week
- A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology☆26Updated 8 months ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆35Updated last year
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- Deep representation learning for disease prediction based on microbiome data☆56Updated last year
- ☆16Updated last year
- ☆60Updated 4 years ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆48Updated last year
- ARCHS4 RNA-seq processing scripts and web server pages.☆54Updated 4 years ago
- Scripts to analyze TCGA data☆117Updated 11 months ago
- Disease Ontology Semantic and Enrichment analysis☆119Updated 3 months ago
- Microbial analysis in TCGA data☆90Updated 11 months ago