erilu / pubmed-abstract-compilerLinks
Python script that downloads all pubmed abstracts corresponding to user-specified keyword searches, by performing automated NCBI E-utility queries
☆32Updated 5 years ago
Alternatives and similar repositories for pubmed-abstract-compiler
Users that are interested in pubmed-abstract-compiler are comparing it to the libraries listed below
Sorting:
- A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology☆28Updated 8 months ago
- Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NI…☆80Updated 5 months ago
- A centralized location for storing curated data from cBioPortal☆194Updated last week
- Batch download articles based on PMID (Pubmed ID)☆131Updated 2 years ago
- Explainable AI for Bioinformatics☆126Updated 2 years ago
- ☆77Updated 4 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆55Updated 5 months ago
- MyGene.info: A BioThings API for gene annotations☆128Updated 2 months ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆124Updated last month
- ☆83Updated 11 months ago
- Biomedical knowledge mining using GOSemSim and clusterProfiler☆80Updated 2 years ago
- A catalog of appyter notebooks☆38Updated last month
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Updated 4 months ago
- CMap Notebooks for LINCS 2020 Workshop☆47Updated 4 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆65Updated 4 years ago
- Framework for Interpretable Neural Networks☆111Updated 7 months ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆95Updated 10 months ago
- ☆32Updated 10 months ago
- ☆17Updated 6 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Simulate patients with rare genetic conditions☆24Updated 2 years ago
- Deep learning based processing of Atac-seq data☆131Updated 2 years ago
- Associations of genomic features, drugs and diseases☆48Updated 2 years ago
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆41Updated 2 years ago
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆31Updated 11 months ago
- Prize-Collecting Steiner Forests for Interactomes☆62Updated last year
- Clinical interpretation of somatic mutations in cancer☆49Updated 8 months ago
- ☆31Updated last year
- mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens☆30Updated last year
- R package to analyze large-scale pharmacogenomic datasets.☆71Updated last month