Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NIH
☆92Jun 6, 2025Updated 11 months ago
Alternatives and similar repositories for NIGMS-Sandbox
Users that are interested in NIGMS-Sandbox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Documentation and tutorials on using AWS for biomedical research☆18Mar 31, 2026Updated last month
- Benchmarking gene embeddings on single, paired, and gene set tasks☆20Nov 29, 2025Updated 5 months ago
- ☆16Dec 8, 2025Updated 5 months ago
- R Shiny application "Vaccine Designer" aiming for the construction of vaccine sequences based on multi epitope design workflow.☆11Jun 25, 2024Updated last year
- Standalone shiny server container for viewing CellChat object☆13Feb 18, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆20Sep 19, 2025Updated 8 months ago
- Transformer for protein function prediction (version 2)☆14Jan 8, 2026Updated 4 months ago
- Workflows for health technology Assessments in R using Discrete EveNts☆12Updated this week
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆33May 11, 2026Updated 2 weeks ago
- Leveraging protein-language models for virtual screening☆23Jun 5, 2024Updated last year
- Web-Application for the cross-visualization of HiC and ChIP-seq data.☆19Feb 17, 2026Updated 3 months ago
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆15Mar 3, 2026Updated 2 months ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- ☆16Apr 11, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Oct 25, 2021Updated 4 years ago
- ☆13Jul 2, 2025Updated 10 months ago
- Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data☆19May 28, 2021Updated 4 years ago
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆16Mar 27, 2024Updated 2 years ago
- ☆13Feb 20, 2024Updated 2 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- CellProfiler plugins for multiplexed image analysis☆12Feb 16, 2021Updated 5 years ago
- ☆15May 31, 2025Updated 11 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Introduction to Computational Biology - source Rmarkdown files☆67Oct 28, 2024Updated last year
- PRONAME is an open-source bioinformatics pipeline that allows processing and significantly increasing the accuracy of Nanopore metabarcod…☆17May 6, 2026Updated 2 weeks ago
- ☆13Mar 17, 2024Updated 2 years ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆38Jun 10, 2024Updated last year
- ☆12Jun 16, 2023Updated 2 years ago
- Curriculum Vitae☆14May 8, 2026Updated 2 weeks ago
- An Introductory Workshop on Modern Data Analyses and Workflows for Reproducible Research in R☆15Updated this week
- Jupyter book and content for "Machine Learning for Molecular Dynamics" course☆13Apr 7, 2022Updated 4 years ago
- An r package for proteomics data Analysis, developed from DEP.☆35Mar 21, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- For BioHackathon Europe 2021.☆30Nov 18, 2022Updated 3 years ago
- Use cloud technology to annotate human sequence variants in parallel.☆11Jun 4, 2021Updated 4 years ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆36Apr 9, 2025Updated last year
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 7 years ago
- Bacterial GWAS analysis☆55Updated this week
- LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.☆15Jun 1, 2022Updated 3 years ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆17Feb 29, 2024Updated 2 years ago