Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NIH
☆92Jun 6, 2025Updated last year
Alternatives and similar repositories for NIGMS-Sandbox
Users that are interested in NIGMS-Sandbox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Documentation and tutorials on using AWS for biomedical research☆19Jun 10, 2026Updated 3 weeks ago
- Documentation and tutorials on using GCP for biomedical research☆36Jun 10, 2026Updated 3 weeks ago
- Benchmarking gene embeddings on single, paired, and gene set tasks☆20Nov 29, 2025Updated 7 months ago
- ☆16Dec 8, 2025Updated 6 months ago
- BiocompR is a R package build upon ggplot2 to improve commonly used plots dedicated to data comparison, dataset exploration and, ultimate…☆18Jan 15, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R Shiny application "Vaccine Designer" aiming for the construction of vaccine sequences based on multi epitope design workflow.☆11Jun 25, 2024Updated 2 years ago
- Standalone shiny server container for viewing CellChat object☆14Feb 18, 2021Updated 5 years ago
- ☆20Sep 19, 2025Updated 9 months ago
- Transformer for protein function prediction (version 2)☆14Jun 5, 2026Updated last month
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆33Jun 25, 2026Updated last week
- ☆26Jul 11, 2024Updated last year
- Leveraging protein-language models for virtual screening☆23Jun 5, 2024Updated 2 years ago
- DEP package☆33Sep 28, 2022Updated 3 years ago
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆16Mar 3, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆15Jun 5, 2019Updated 7 years ago
- ☆16Apr 11, 2022Updated 4 years ago
- ☆13Jul 2, 2025Updated last year
- Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data☆19May 28, 2021Updated 5 years ago
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆16Mar 27, 2024Updated 2 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- ☆14May 31, 2025Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- ☆13Mar 17, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆38Jun 10, 2024Updated 2 years ago
- ☆12Jun 16, 2023Updated 3 years ago
- Curriculum Vitae☆14May 8, 2026Updated last month
- Jupyter book and content for "Machine Learning for Molecular Dynamics" course☆13Apr 7, 2022Updated 4 years ago
- For BioHackathon Europe 2021.☆30Nov 18, 2022Updated 3 years ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Sep 1, 2015Updated 10 years ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆36Apr 9, 2025Updated last year
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 7 years ago
- LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.☆15Jun 1, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆19Feb 29, 2024Updated 2 years ago
- COCONUT (COlleCtion of Open Natural prodUcTs): A comprehensive platform facilitating natural product research by providing data, tools, a…☆60Jun 23, 2026Updated last week
- GPU implementation of ARD NMF☆45Jan 20, 2026Updated 5 months ago
- LLM-based gene function enrichment tool☆18Feb 19, 2025Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆80Sep 9, 2025Updated 9 months ago
- Python client for GA4GH htsget protocol☆15Nov 7, 2022Updated 3 years ago
- ☆12Jun 24, 2026Updated last week