MrBiomics: Composable modules and recipes automate bioinformatics for multi-omics analyses
☆161Nov 22, 2025Updated 4 months ago
Alternatives and similar repositories for MrBiomics
Users that are interested in MrBiomics are comparing it to the libraries listed below
Sorting:
- A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices re…☆53Jan 9, 2026Updated 2 months ago
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆53Dec 7, 2025Updated 3 months ago
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆97Nov 25, 2025Updated 3 months ago
- A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…☆54Sep 5, 2025Updated 6 months ago
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆57Jan 29, 2026Updated last month
- A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma…☆61Nov 25, 2025Updated 3 months ago
- CeMM's Snakemake SLURM cluster profile☆49Oct 8, 2025Updated 5 months ago
- Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.☆44Jun 23, 2025Updated 8 months ago
- A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, p…☆73Mar 13, 2026Updated last week
- RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆42Aug 5, 2025Updated 7 months ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆197Mar 9, 2026Updated last week
- Large language models as universal biomedical simulators☆20Jul 17, 2024Updated last year
- Python toolkit for building restartable pipelines☆46Mar 6, 2026Updated 2 weeks ago
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- Benchmark of GRNs using the GRETA pipeline☆31Updated this week
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Sep 2, 2024Updated last year
- 🔄 Hot module reload for python, automatically reload your code when files are modified. No need to modify source code.☆33Nov 20, 2025Updated 4 months ago
- A VCF parser and variant record model in JavaScript.☆22Mar 4, 2017Updated 9 years ago
- Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set☆17Aug 9, 2019Updated 6 years ago
- Simulation and optimization of cell clusters.☆12Aug 25, 2025Updated 6 months ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 5 years ago
- Preprint | Previously at GenBio ICML 2025☆19Aug 20, 2025Updated 7 months ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆22Aug 29, 2022Updated 3 years ago
- Toolkit for metacell analysis☆23Aug 8, 2024Updated last year
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated 7 months ago
- R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox: An extensive set of data (pre-)processing and analysis m…☆10Feb 21, 2026Updated last month
- The MolE pre-training framework to learn general molecular representations from unlabeled structures☆12May 26, 2025Updated 9 months ago
- Experimental evaluation and comparison of multi-omics data integration methods for cancer subtyping☆14Aug 13, 2021Updated 4 years ago
- MuDCoD: Multi-subject Dynamic Community Detection☆11Mar 18, 2025Updated last year
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13Jan 26, 2026Updated last month
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated 11 months ago
- Domain based annotation of transposable elements☆22Oct 8, 2025Updated 5 months ago
- ☆13Nov 19, 2021Updated 4 years ago
- scoreCT: Automated Cell Type Annotation☆16Apr 18, 2022Updated 3 years ago
- ☆12Dec 12, 2024Updated last year
- A python solver of futoshikis from an image☆10Jul 24, 2023Updated 2 years ago
- Causal Modeling with Stationary Diffusions, AISTATS 2024☆21Mar 3, 2025Updated last year
- ☆20Apr 7, 2025Updated 11 months ago
- Course website for Biostat 840 in Fall 2022☆12Dec 20, 2022Updated 3 years ago