epigen / MrBiomicsLinks
MrBiomics: Modules & Recipes augment Bioinformatics for Multi-Omics Analyses
☆55Updated this week
Alternatives and similar repositories for MrBiomics
Users that are interested in MrBiomics are comparing it to the libraries listed below
Sorting:
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆59Updated last week
- ☆31Updated 6 months ago
- A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, …☆25Updated last week
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆65Updated 2 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆77Updated last year
- ☆67Updated last month
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆23Updated last month
- ☆40Updated 4 years ago
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆22Updated last month
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆59Updated 9 months ago
- A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) …☆31Updated last week
- code to run sei and obtain sei and sequence class predictions☆106Updated 2 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 3 weeks ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 4 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 4 months ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆57Updated last month
- Normalization of RNA-seq gene expression☆92Updated last month
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆68Updated this week
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆83Updated last month
- Molecular interactions inference from single-cell multi-omics data☆27Updated 2 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆177Updated 3 weeks ago
- deep learning-inspired explainable sequence model for transcription initiation☆97Updated 5 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Updated 4 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆44Updated 8 months ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 4 months ago
- ☆41Updated 2 weeks ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 6 months ago
- flexible CDR based distance metrics☆66Updated 11 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆43Updated this week
- bioinformatics plotting and tools☆59Updated last year