epigen / MrBiomicsLinks
MrBiomics: Composable modules and recipes automate bioinformatics for multi-omics analyses
☆151Updated 2 months ago
Alternatives and similar repositories for MrBiomics
Users that are interested in MrBiomics are comparing it to the libraries listed below
Sorting:
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆54Updated last week
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆94Updated 2 months ago
- A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) …☆61Updated 4 months ago
- A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…☆51Updated 5 months ago
- A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, …☆53Updated 6 months ago
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆51Updated 2 months ago
- A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma…☆58Updated 2 months ago
- A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, p…☆71Updated 4 months ago
- Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.☆41Updated 7 months ago
- CeMM's Snakemake SLURM cluster profile☆45Updated 4 months ago
- An R package for ECM molecule annotation, classification, and analysis☆14Updated last year
- RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆40Updated 6 months ago
- ☆88Updated 2 weeks ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆128Updated 9 months ago
- A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices re…☆49Updated last month
- Python package to perform enrichment analysis from omics data.☆253Updated last week
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆149Updated 3 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆123Updated last week
- ☆58Updated 2 weeks ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆153Updated 6 months ago
- R package to access DoRothEA's regulons☆154Updated last year
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆185Updated last month
- ☆124Updated last week
- Spatial transcriptomics of heart tissue☆107Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Updated 11 months ago
- SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/☆23Updated 4 years ago
- Clonotype Neighbor Graph Analysis☆95Updated 5 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆121Updated 3 months ago
- A tool for semi-automatic cell type harmonization and integration☆118Updated 3 months ago
- Multi-omic velocity inference☆116Updated last year