R package for real-time Rt estimation with penalized splines
☆15Jan 12, 2026Updated 2 months ago
Alternatives and similar repositories for cfa-gam-rt
Users that are interested in cfa-gam-rt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Updated this week
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆17Oct 31, 2024Updated last year
- ☆10Feb 9, 2026Updated last month
- ☆11Mar 14, 2026Updated last week
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆28Mar 9, 2026Updated 2 weeks ago
- Estimate epidemiological delay distributions with brms☆15Mar 2, 2026Updated 3 weeks ago
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆51Mar 16, 2026Updated last week
- ☆23Jun 6, 2025Updated 9 months ago
- Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.☆26Updated this week
- US RSV Forecast Hub☆12Mar 13, 2026Updated last week
- Tools for building predictive models in epidemiology.☆17Sep 19, 2025Updated 6 months ago
- Models and infrastructure for forecasting respiratory disease hospitalizations using wastewater data with PyRenew.☆16Updated this week
- Code to test Rt estimates against synthetic data☆18Nov 30, 2020Updated 5 years ago
- Nowcasting by Bayesian Smoothing☆18May 14, 2025Updated 10 months ago
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆21Updated this week
- Repository to the R package nowcaster, nowcasting with INLA☆23Sep 20, 2025Updated 6 months ago
- Process very large Stan models efficiently☆14Dec 5, 2025Updated 3 months ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆23Updated this week
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆63Mar 9, 2026Updated 2 weeks ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Nov 11, 2025Updated 4 months ago
- Course on nowcasting and forecasting of infectious disease dynamics☆23Mar 2, 2026Updated 3 weeks ago
- ☆21Mar 16, 2026Updated last week
- ☆10Sep 30, 2025Updated 5 months ago
- Tools for constructing and plotting Markov Random Fields in R for graphical data☆21Updated this week
- Analysis of COVID-19 transmission using cluster size distribution☆11Jun 14, 2022Updated 3 years ago
- Additional censored event tools for Distributions.jl☆14Mar 10, 2026Updated last week
- ☆12Mar 13, 2026Updated last week
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 5 months ago
- A repository run by the Centers for Disease Control and Prevention (CDC) to collect forecasts of incident respiratory COVID-19 hospital a…☆23Updated this week
- ableist-language-detector☆11Jan 15, 2023Updated 3 years ago
- Importer for Godot for Blender☆12Feb 16, 2022Updated 4 years ago
- Stochastic epidemiological branching simulation☆10Dec 14, 2020Updated 5 years ago
- Code and data for the manuscript "Optimal, near-optimal, and robust epidemic control"☆11Jul 23, 2022Updated 3 years ago
- Influpaint : Inpainting denoising diffusion probabilistic models for infectious disease (such as influenza) forecasting☆17Mar 12, 2026Updated last week
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13May 18, 2022Updated 3 years ago
- ☆15Jan 10, 2021Updated 5 years ago
- RSV Scenario Modeling Hub☆16Mar 16, 2026Updated last week
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Dec 18, 2022Updated 3 years ago
- Utilities for Scoring and Assessing Predictions☆61Mar 9, 2026Updated 2 weeks ago