CDCgov / PyRenewLinks
Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.
☆16Updated last week
Alternatives and similar repositories for PyRenew
Users that are interested in PyRenew are comparing it to the libraries listed below
Sorting:
- ☆11Updated this week
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆14Updated 7 months ago
- ☆11Updated this week
- Data and statistical models for biomarker shedding.☆13Updated 2 weeks ago
- R package for real-time Rt estimation with penalized splines☆14Updated last week
- ☆10Updated 8 months ago
- ☆22Updated 2 weeks ago
- Code of PriorVAE: encoding spatial priors with variational autoencoders☆12Updated last year
- Materials for the course on Bayesian model building run at Second Faculty of Medicine at Charles University in Prague☆11Updated last year
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆17Updated this week
- An R package for Bayes Linear emulation and history matching.☆16Updated 3 months ago
- Course on nowcasting and forecasting of infectious disease dynamics☆19Updated this week
- ☆16Updated this week
- Easily combine predictions from multiple Bayesian models using techniques including (pseudo) Bayesian model averaging, hierarchical stack…☆34Updated 7 months ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13Updated 3 years ago
- A web app to visualize distributions in Stan. Uses Stan Math C++ compiled to Webassembly to evaluate the functions using actual Stan impl…☆44Updated 2 years ago
- Monitor MCMC runs in the browser☆36Updated last year
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated last year
- Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew☆11Updated this week
- R-package for building and fitting Bayesian ODE models in Stan☆27Updated 9 months ago
- Utilities for Scoring and Assessing Predictions☆54Updated last week
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆27Updated 4 years ago
- Repository to the R package nowcaster, nowcasting with INLA☆21Updated this week
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆24Updated 5 months ago
- US RSV Forecast Hub☆12Updated this week
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated 5 months ago
- Repo for code for "Unrepresentative Surveys Significantly Overestimate Vaccine Uptake in the US"☆14Updated 3 years ago
- Towards a more flexible BART☆22Updated last week
- ArviZ modular plotting☆18Updated this week