chaolongwang / SAPHIRE
Modelling transmission dynamics of COVID-19, while accounting for presymptomatic infectiousness, time-varying ascertainment rates, transmission rates and population movements.
☆21Updated 4 years ago
Alternatives and similar repositories for SAPHIRE:
Users that are interested in SAPHIRE are comparing it to the libraries listed below
- Updates to the synthetic contact matrices☆36Updated last year
- R package for deriving social mixing matrices from survey data.☆38Updated last month
- Bayesian estimation of Rt (C code)☆13Updated 5 years ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆96Updated 7 months ago
- Inferring high-resolution human mixing patterns for disease modeling☆45Updated 2 years ago
- SEIR transmission model of COVID-19. Documentation at:☆51Updated last year
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- Age-structured SEIR model for COVID-19 outbreak in Wuhan, China☆40Updated 5 years ago
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆25Updated last month
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 4 years ago
- National and subnational estimates of the time-varying reproduction number for Covid-19☆34Updated 2 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆126Updated last week
- ☆23Updated 4 years ago
- An R package with Dynamic Models of infectious diseases☆29Updated 5 months ago
- ☆17Updated 4 years ago
- ☆35Updated this week
- FluSight Forecast Submissions☆19Updated last year
- Analysis code and data for COVID-19 age-specific clinical fraction☆22Updated 4 years ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated 11 months ago
- European Covid-19 Forecast Hub.☆48Updated 5 months ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Compartmental SEIQRD model to model the effects of government policies on SARS-CoV-2 spread in Belgium. Macro-economic Input-Output model…☆23Updated 3 months ago
- epidemia package☆48Updated 2 years ago
- Flu Scenario Modeling Hub☆11Updated this week
- Local Burden of Disease☆40Updated 2 years ago
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆53Updated 6 months ago
- ☆11Updated 4 years ago
- Covid19 microsimulation☆15Updated 4 years ago