covid19br / nowcasterLinks
Repository to the R package nowcaster, nowcasting with INLA
☆21Updated 3 weeks ago
Alternatives and similar repositories for nowcaster
Users that are interested in nowcaster are comparing it to the libraries listed below
Sorting:
- Course on nowcasting and forecasting of infectious disease dynamics☆21Updated last month
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated 7 months ago
- An R package for Bayes Linear emulation and history matching.☆16Updated 4 months ago
- Create Contact Matrices from Population Data☆20Updated 2 months ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Updated last year
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 6 years ago
- ☆30Updated last week
- Workshop on hhh4 and the endemic-epidemic framework☆17Updated 2 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- ☆10Updated 10 months ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 2 years ago
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- Examples on INLA within MCMC☆12Updated 8 years ago
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆16Updated 5 months ago
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆15Updated 9 months ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Fit stochastic differential equation models with time-varying parameters☆15Updated 2 months ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆22Updated this week
- Survival modelling via ODEs☆10Updated 4 months ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated 10 months ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)☆9Updated 3 weeks ago
- Estimate epidemiological delay distributions with brms☆15Updated 3 months ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆27Updated 4 years ago
- Utilities for Scoring and Assessing Predictions☆53Updated 2 weeks ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- R package for Bayesian nonparametric adaptive smoothing with Stan☆9Updated 4 years ago
- Short course on parametric survival analysis☆15Updated 8 months ago
- Joint modeling multivariate longitudinal and time-to-event outcomes with INLA☆21Updated 3 weeks ago