mrc-ide / squireLinks
SEIR transmission model of COVID-19. Documentation at:
☆51Updated last year
Alternatives and similar repositories for squire
Users that are interested in squire are comparing it to the libraries listed below
Sorting:
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- An R package with Dynamic Models of infectious diseases☆29Updated 6 months ago
- SEIR+ model☆19Updated 9 months ago
- Source code for the EpiEstim app.☆31Updated 5 years ago
- Personal blog☆40Updated 5 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- Bayesian SEIR model to estimate the effects of social-distancing on COVID-19☆26Updated 4 years ago
- epidemia package☆48Updated 2 years ago
- ☆40Updated 10 months ago
- Flu Scenario Modeling Hub☆12Updated last month
- R package for deriving social mixing matrices from survey data.☆38Updated last month
- A tool to estimate time varying instantaneous reproduction number during epidemics☆97Updated 2 weeks ago
- R Package for individual based epidemiological models☆30Updated 8 months ago
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago
- ☆41Updated 3 weeks ago
- European Covid-19 Forecast Hub.☆48Updated 7 months ago
- Updates to the synthetic contact matrices☆36Updated last year
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆129Updated last week
- National and subnational estimates of the time-varying reproduction number for Covid-19☆34Updated 2 years ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated this week
- R package for "Epidemics: Models and data using R"☆55Updated 2 years ago
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆54Updated 7 months ago
- An R package to accompany the Epidemiology R Handbook, a free open-access R reference manual for applied epidemiologists and public healt…☆45Updated 2 weeks ago
- ☆20Updated 2 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- COVerAGE-DB: COVID-19 cases, deaths, and tests by age and sex☆57Updated last year
- Analysing epidemic trends using AutoML approaches.☆18Updated 4 years ago
- A framework for data-driven stochastic disease spread simulations☆35Updated last week
- R package for easier interactions with the Go.Data API☆13Updated 2 years ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆18Updated 3 years ago