mrc-ide / squireLinks
SEIR transmission model of COVID-19. Documentation at:
☆51Updated last year
Alternatives and similar repositories for squire
Users that are interested in squire are comparing it to the libraries listed below
Sorting:
- A tool to estimate time varying instantaneous reproduction number during epidemics☆101Updated 2 weeks ago
- Derive social mixing matrices from survey data.☆43Updated this week
- R Package for individual based epidemiological models☆32Updated 5 months ago
- SEIR+ model☆19Updated 5 months ago
- Source code for the EpiEstim app.☆35Updated 5 months ago
- epidemia package☆49Updated 3 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- COVerAGE-DB: COVID-19 cases, deaths, and tests by age and sex☆58Updated 2 years ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- ☆43Updated 4 months ago
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆55Updated last year
- An R package with Dynamic Models of infectious diseases☆30Updated last year
- R package dlnm☆89Updated 9 months ago
- ☆23Updated 4 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆133Updated this week
- R package for easier interactions with the Go.Data API☆13Updated 2 years ago
- The case time series design☆24Updated 6 months ago
- Bayesian SEIR model to estimate the effects of social-distancing on COVID-19☆27Updated 4 years ago
- Personal blog☆40Updated 5 years ago
- Bayesian Regression with INLA☆52Updated 2 years ago
- API Client and Data Munging for the Demographic and Health Survey Data☆38Updated 10 months ago
- ☆29Updated 7 months ago
- R package providing utilities for INLA☆31Updated 3 years ago
- COVID-19 Scenario Modeling Hub☆67Updated 8 months ago
- Report templates and helper functions for applied epidemiology☆44Updated this week
- Extract raw underlying data from PDF figures☆55Updated last year
- An R package to accompany the Epidemiology R Handbook, a free open-access R reference manual for applied epidemiologists and public healt…☆49Updated 8 months ago
- Video lectures, slides and code for "The Mathematics and Statistics of Infectious Disease Outbreaks" course at Stockholm University☆36Updated 5 years ago
- ☆39Updated last year
- nlrx NetLogo R☆79Updated last month