ehsanasgari / dimotif
Alignment-free Protein Motif Miner
☆16Updated 6 years ago
Alternatives and similar repositories for dimotif
Users that are interested in dimotif are comparing it to the libraries listed below
Sorting:
- Amino Acid Embedding Representation as Machine Learning Features☆19Updated 6 years ago
- The repository contains all the code for the paper amino acid encoding using deep learning application☆21Updated 10 months ago
- Implementation of ReSimNet for drug response similarity prediction☆40Updated last year
- Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"☆39Updated last year
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- ProFET: Protein Feature Engineering Toolkit for Machine Learning☆57Updated 9 years ago
- Source code for "A novel methodology on distributed representations of proteins using their interacting ligands"☆28Updated 5 years ago
- NLP for Proteins - A paper collection☆13Updated 4 years ago
- Interpreting graph convolutional filters of target prediction network☆48Updated 6 years ago
- ProtVec can be used in protein interaction predictions, structure prediction, and protein data visualization.☆33Updated 2 years ago
- DeepGS: Deep Representation Learning of Graphs and Sequences for Drug-Target Binding Affinity Prediction (ECAI 2020)☆26Updated 4 years ago
- CapsNet for Protein Post-translational Modification site prediction.☆25Updated 5 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆72Updated 4 years ago
- Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.☆73Updated 2 years ago
- Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery☆27Updated 4 years ago
- Pytorch implementation of BionoiNet, which is a deep learning-based software to classify ligand-binding sites.☆20Updated 3 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆57Updated 3 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 5 years ago
- PaccMann models for protein language modeling☆42Updated 3 years ago
- A Python package for extracting protein sequence features☆59Updated 2 years ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Updated 2 years ago
- ☆25Updated 3 years ago
- DEEPScreen: Virtual Screening with Deep Convolutional Neural Networks Using Compound Images☆113Updated 9 months ago
- deep protein solubility prediction☆36Updated 6 years ago
- ☆34Updated 4 years ago
- ☆51Updated 4 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆60Updated 2 months ago
- A new approach for representing biological sequences☆99Updated 8 months ago
- ☆46Updated 5 months ago