edgardomortiz / sam2consensus
Get the consensus sequences from SAM (and BAM) files, ignoring the reference
☆10Updated 5 years ago
Alternatives and similar repositories for sam2consensus:
Users that are interested in sam2consensus are comparing it to the libraries listed below
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 6 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- ☆16Updated 3 years ago
- Repository for speciation genomics website☆24Updated 8 months ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆14Updated 2 months ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆20Updated 3 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆34Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- ☆39Updated last year
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆49Updated 2 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆41Updated last year
- Quantifying Introgression via Branch Lengths☆50Updated 2 years ago
- Portable solution to generate genome alignment chains using lastz☆55Updated 5 months ago
- Genome-wide de novo genotyping with 2bRAD☆22Updated 5 months ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆57Updated 6 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 2 weeks ago
- Software for ancestry estimation in unrelated individuals☆18Updated 3 weeks ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆18Updated 2 years ago
- ☆30Updated 3 weeks ago