edgardomortiz / sam2consensusLinks
Get the consensus sequences from SAM (and BAM) files, ignoring the reference
☆13Updated 6 years ago
Alternatives and similar repositories for sam2consensus
Users that are interested in sam2consensus are comparing it to the libraries listed below
Sorting:
- Methods for examining PCA locally along the genome.☆87Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- Automated de novo assembly of whole chloroplast genomes.☆48Updated last year
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated last week
- ☆45Updated 9 years ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- Estimate recombination rates from population genetic data☆71Updated 5 years ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated last year
- Interim data for the Darwin Tree of Life Project☆33Updated 5 years ago
- Synteny Imager☆65Updated last month
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated 3 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆69Updated 3 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated last year
- Scripts to calculate population genetics statistics☆55Updated 7 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute☆65Updated this week
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- ☆26Updated 11 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Quantifying Introgression via Branch Lengths☆56Updated 3 years ago
- Portable solution to generate genome alignment chains using lastz☆60Updated last month
- A set of functions to visualise genotypes based on a VCF☆88Updated 4 years ago
- ☆66Updated 3 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated last year
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated last month