edgardomortiz / sam2consensus
Get the consensus sequences from SAM (and BAM) files, ignoring the reference
☆10Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for sam2consensus
- Automated de novo assembly of whole chloroplast genomes.☆44Updated 2 months ago
- microhaplotype visualizer and analyzer☆18Updated 3 years ago
- Repository for speciation genomics website☆24Updated 4 months ago
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆26Updated last month
- A statistical framework for ploidy estimation using NGS short-read data☆55Updated 6 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆42Updated 8 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 3 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆32Updated last year
- Tutorial about R package PopGenome☆40Updated 5 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆44Updated 5 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆68Updated 3 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆39Updated 5 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- Assessing confidence in introgression among four populations☆26Updated 3 years ago
- ☆12Updated last year
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆18Updated 2 years ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆31Updated last year
- Population assignment analysis using R☆17Updated 2 weeks ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆54Updated last month
- ☆38Updated last year
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆32Updated 6 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆24Updated 6 years ago
- Tools and Utilities for msmc and msmc2☆46Updated last year
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- Software for ancestry estimation in unrelated individuals☆10Updated last week
- Interim data for the Darwin Tree of Life Project☆32Updated 4 years ago