Get the consensus sequences from SAM (and BAM) files, ignoring the reference
☆13Oct 27, 2019Updated 6 years ago
Alternatives and similar repositories for sam2consensus
Users that are interested in sam2consensus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Jun 9, 2026Updated last month
- Yet another Hi-C scaffolding tool☆23Oct 23, 2024Updated last year
- ☆24Mar 15, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 8 months ago
- ☆13Jun 3, 2026Updated last month
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Updated this week
- Tutorials for bioinformatics and data analysis related to landscape genomics☆30Jan 19, 2019Updated 7 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- A Demultiplexing Tool for Illumina Sequencers☆10Sep 27, 2016Updated 9 years ago
- ☆16May 7, 2023Updated 3 years ago
- Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)☆10Mar 24, 2020Updated 6 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆12Feb 22, 2024Updated 2 years ago
- Deep learning-based prediction of regulatory genome sequences☆12Apr 20, 2020Updated 6 years ago
- Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach - Computational methods☆10Jan 19, 2022Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- AUGUSTUS v3.2.1 for installation on Mac OS X☆12May 21, 2018Updated 8 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆26Mar 11, 2023Updated 3 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Recreation of the DNA Sequence Classification Paper☆12Oct 27, 2016Updated 9 years ago
- ☆13Sep 6, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a python package for finding tandem repeats from genomic sequences☆38Jun 11, 2026Updated last month
- Quantifying Introgression via Branch Lengths☆58Sep 30, 2022Updated 3 years ago
- A pipeline for de novo assembly of population-level sequence capture datasets.☆12Nov 6, 2018Updated 7 years ago
- A machine learning framework to predict antibiotic resistance traits and yet unknown genes underlying resistance to specific antibiotics …☆15Oct 6, 2022Updated 3 years ago
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- Hybridization detection using phylogenetic invariants☆53Oct 29, 2024Updated last year
- ☆11Apr 20, 2018Updated 8 years ago
- 使用Pandoc Markdown和LaTeX写华中科技大学本科生毕业论文。☆10Apr 9, 2014Updated 12 years ago
- filtering SNPs based on LD and HWE status☆10Jul 3, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A organelle de novo genome assembly toolkit☆81Feb 22, 2025Updated last year
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R…☆17Jun 23, 2026Updated last month
- rnalib: a python-based transcriptomics library☆13Jan 23, 2026Updated 6 months ago
- Sequence-to-function deep learning frameworks for engineered riboregulators☆14Aug 3, 2023Updated 2 years ago
- MirMachine, a command line tool to detect microRNA homologs in genome sequences.☆16Updated this week
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 5 years ago