edgardomortiz / sam2consensusLinks
Get the consensus sequences from SAM (and BAM) files, ignoring the reference
☆12Updated 6 years ago
Alternatives and similar repositories for sam2consensus
Users that are interested in sam2consensus are comparing it to the libraries listed below
Sorting:
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- Methods for examining PCA locally along the genome.☆85Updated last year
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆67Updated last week
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Tutorial about R package PopGenome☆44Updated 6 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 2 weeks ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated 9 months ago
- Interim data for the Darwin Tree of Life Project☆33Updated 5 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Estimate recombination rates from population genetic data☆68Updated 5 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Quantifying Introgression via Branch Lengths☆54Updated 3 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆57Updated 4 months ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- ☆64Updated 2 years ago
- Portable solution to generate genome alignment chains using lastz☆59Updated last month
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Updated 3 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆31Updated 2 weeks ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- ☆44Updated 8 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆91Updated last year
- Implementation of the multiple sequential markovian coalescent☆89Updated 2 months ago