YAndrewL / CLAPE
contrastive learning and pre-trained encoder for protein-ligand binding sites prediction
☆20Updated 3 weeks ago
Related projects: ⓘ
- TEIM: TCR-Epitope Interaction Modeling☆42Updated last year
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆29Updated 3 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆40Updated 10 months ago
- ☆63Updated 2 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆55Updated last month
- ☆11Updated last year
- open source code for Tencent tFold☆63Updated 4 months ago
- ☆25Updated last week
- ☆28Updated 11 months ago
- ☆31Updated last year
- ☆18Updated 3 months ago
- Epitope Prediction Pipeline and analysis tools built around AlphaFold 2☆11Updated 4 months ago
- a deep learning architecture for RNA-ligand binding sites prediction☆17Updated 7 months ago
- Contrastive learning harmonizing protein language models and natural language models☆17Updated 3 months ago
- Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2024…☆42Updated last week
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆39Updated this week
- An accurate and efficient protein sequence design approach☆19Updated 9 months ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆24Updated last year
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆26Updated 4 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆34Updated 3 months ago
- Fitness landscapes for antibodies☆47Updated 5 months ago
- ☆62Updated 2 months ago
- ☆26Updated 5 months ago
- Machine learning models for antibody sequences in PyTorch☆38Updated 3 years ago
- ☆24Updated last month
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆35Updated last month
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆41Updated last month
- ☆67Updated 4 years ago
- RNA Multiple Sequence Alignment☆24Updated last year
- ☆17Updated 2 months ago