YAndrewL / CLAPELinks
contrastive learning and pre-trained encoder for protein-ligand binding sites prediction
☆30Updated last month
Alternatives and similar repositories for CLAPE
Users that are interested in CLAPE are comparing it to the libraries listed below
Sorting:
- ☆44Updated 11 months ago
- open source code for Tencent tFold☆108Updated 5 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated last year
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆69Updated 2 months ago
- Efficient implementatin of ESM family.☆67Updated last week
- ☆71Updated 4 years ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆79Updated last year
- TEIM: TCR-Epitope Interaction Modeling☆51Updated 2 years ago
- ☆35Updated 2 years ago
- ☆41Updated 5 months ago
- ☆52Updated last year
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆71Updated 6 months ago
- ☆60Updated last year
- Protein language model trained on coding DNA☆49Updated 10 months ago
- Machine learning models for antibody sequences in PyTorch☆41Updated 4 years ago
- ☆68Updated 11 months ago
- Code repository of "Deep generative design of RNA family sequences"☆35Updated last year
- DeepAAI☆33Updated 8 months ago
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- RNA Multiple Sequence Alignment☆43Updated 2 years ago
- A command-line interface and Python library for generating AlphaFold3 input files.☆35Updated 2 months ago
- Making Protein Modeling Accessible to All Biologists☆118Updated this week
- ☆113Updated last year
- Learning the language of protein-protein interactions☆89Updated this week
- ☆86Updated 2 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆102Updated 2 weeks ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆73Updated 3 months ago
- ☆35Updated last year
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆21Updated 2 years ago
- Pretrainable geometric graph neural network for antibody affinity maturation☆60Updated 5 months ago