Alternatives and similar repositories for MASSA:

Users that are interested in MASSA are comparing it to the libraries listed below

• zaixizhang / FLAG
  Implementation of ICLR23 paper "Molecule Generation for Target Protein Binding with Structural Motifs"
  ☆64Updated last year
• LirongWu / PSC-CPI
  Code for AAAI 2024 paper "PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein In…
  ☆25Updated 2 months ago
• wyky481l / MMCD
  ☆26Updated 6 months ago
• admislf / MINN-DTI
  Effective drug-target interaction prediction with mutual interaction neural network
  ☆32Updated 2 years ago
• biomed-AI / GraphPPIS
  ☆52Updated 8 months ago
• EureKaZhu / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆35Updated last year
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆104Updated last month
• ZhonghuiGu / HEAL
  ☆51Updated 7 months ago
• ml4bio / RiboDiffusion
  ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
  ☆46Updated 5 months ago
• yuanqm55 / GraphPPIS
  Protein-protein interacting site predictor using deep graph convolutional network
  ☆12Updated 2 years ago
• THUNLP-MT / GET
  This repo contains the codes for our paper "Generalist Equivariant Transformer Towards 3D Molecular Interaction Learning" (ICML 2024).
  ☆30Updated 6 months ago
• JU-HuaY / MFR
  ☆11Updated last year
• TencentAILabHealthcare / PALM
  ☆43Updated last year
• bowen-gao / DrugCLIP
  [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening
  ☆82Updated 11 months ago
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆91Updated 2 years ago
• zhengkangjie / ESM-AA
  ☆68Updated 2 months ago
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆57Updated 10 months ago
• Barabasi-Lab / AI-Bind
  Interpretable AI pipeline improving binding predictions for novel protein targets and ligands
  ☆37Updated 11 months ago
• JK-Liu7 / AttentionMGT-DTA
  ☆36Updated 10 months ago
• huankoh / PSICHIC
  PSICHIC (pronounced Psychic) - PhySIcoCHemICal graph neural network for learning protein-ligand interaction fingerprints from sequence da…
  ☆100Updated 10 months ago
• zhaolongNCU / PocketDTA
  PocketDTA
  ☆28Updated 5 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆58Updated last year
• CSUBioGroup / BACPI
  A bi-directional attention neural network for compound–protein interaction and binding affinity prediction.
  ☆30Updated 2 years ago
• biomed-AI / MUSE
  ☆24Updated last year
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆75Updated 3 months ago
• HICAI-ZJU / PromptProtein
  Code and Data for the paper: Multi-level Protein Structure Pre-training with Prompt Learning [ICLR 2023]
  ☆34Updated last year
• smiles724 / GNN-Bottleneck
  ☆39Updated 2 years ago
• BioinfoMachineLearning / ATOMRefine
  3D equivariant graph transformer for all-atom refinement of protein tertiary structures
  ☆25Updated last year
• KyGao / ABGNN
  PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"
  ☆50Updated last year
• Ced3-han / PepFlowww
  Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)
  ☆70Updated 6 months ago