dnanexus-rnd / DeepVariant-GLnexus-WDLLinks
WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus
☆10Updated 6 years ago
Alternatives and similar repositories for DeepVariant-GLnexus-WDL
Users that are interested in DeepVariant-GLnexus-WDL are comparing it to the libraries listed below
Sorting:
- ☆13Updated 8 years ago
- Long read to rMATS☆31Updated 2 years ago
- ☆12Updated 2 years ago
- ☆51Updated 5 years ago
- This repository contains the source code for the tappAS application. See README for details.☆18Updated this week
- An interactive learning resource for next-generation sequencing (NGS) techniques☆29Updated 6 years ago
- Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …☆15Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- R tools to interact with hap.py output☆15Updated 6 years ago
- analysis pipeline for CODEC data☆11Updated last month
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Updated 4 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated last month
- ☆35Updated 3 years ago
- Annotating principal splice isoforms☆14Updated 9 months ago
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- ☆13Updated 7 years ago
- Comprehensive Human Expressed SequenceS☆17Updated this week
- ☆29Updated 4 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year