dhimmel / lincsLinks
Library of Integrated Cellular Signatures L1000
☆31Updated 3 years ago
Alternatives and similar repositories for lincs
Users that are interested in lincs are comparing it to the libraries listed below
Sorting:
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆27Updated 8 months ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆34Updated last year
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆53Updated 2 months ago
- A resource of adverse drug effects extracted from FDA structured product labels☆83Updated 3 months ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆30Updated 3 years ago
- Python Client Package for WikiPathways☆20Updated 2 weeks ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆51Updated 4 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated 4 months ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆43Updated 2 months ago
- A 3-Dimensional View of Human Metabolism and Disease☆30Updated 7 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Updated 4 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Biological Network Integration using Convolutions☆62Updated last year
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆32Updated 8 years ago
- A collection of available Python tools for Proteomics analysis☆61Updated 6 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 4 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆26Updated 8 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- Function prediction using a deep ontology-aware classifier☆84Updated 2 years ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆41Updated 7 months ago
- Code for the analyses in the human reference interactome paper.☆28Updated 2 years ago
- Network-based Drug Repurposing for Human Coronavirus☆40Updated 5 years ago
- L1000 peak deconvolution based on Bayesian analysis☆26Updated 4 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated last year
- Python library for calculting synergy of drug combinations using several drug synergy frameworks☆36Updated 11 months ago