dhimmel / lincsLinks
Library of Integrated Cellular Signatures L1000
☆31Updated 3 years ago
Alternatives and similar repositories for lincs
Users that are interested in lincs are comparing it to the libraries listed below
Sorting:
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆27Updated 6 months ago
- Python Client Package for WikiPathways☆20Updated 3 months ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆52Updated 3 weeks ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated 3 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆33Updated last year
- StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…☆35Updated 2 years ago
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 3 years ago
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆51Updated 3 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Updated last year
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆50Updated 4 years ago
- A resource of adverse drug effects extracted from FDA structured product labels☆82Updated 2 months ago
- Network-based Drug Repurposing for Human Coronavirus☆40Updated 5 years ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆133Updated 3 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 2 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆50Updated 6 years ago
- code for Gogleva et al manuscript☆45Updated 2 years ago
- A platform to do RNA science☆27Updated 4 years ago
- Function prediction using a deep ontology-aware classifier☆84Updated 2 years ago
- ☆64Updated last year
- ☆18Updated 3 years ago
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆21Updated 6 years ago
- Biological Network Integration using Convolutions☆62Updated last year
- ☆11Updated 5 years ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆40Updated 5 months ago