djwooten / synergyLinks
Python library for calculting synergy of drug combinations using several drug synergy frameworks
☆35Updated 8 months ago
Alternatives and similar repositories for synergy
Users that are interested in synergy are comparing it to the libraries listed below
Sorting:
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆24Updated 4 months ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆87Updated last year
- Interactive Python notebooks for PDBe API training☆54Updated last week
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆88Updated last year
- ☆40Updated 3 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆69Updated 2 years ago
- Comprehensive Python client for the Uniprot REST API☆50Updated last week
- scripts and facilities for in-silico mutagenesis with FoldX☆57Updated 6 months ago
- Neural networks for deep mutational scanning data☆69Updated 3 weeks ago
- Set of useful HADDOCK utility scripts☆52Updated 9 months ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆95Updated 2 months ago
- A collection of available Python tools for Proteomics analysis☆56Updated 6 years ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆38Updated 9 months ago
- ☆17Updated 9 months ago
- ColabFold protocol☆51Updated 8 months ago
- Python package and command line tool for epitope prediction☆51Updated 10 months ago
- Direct coupling analysis software for protein and RNA sequences☆50Updated last month
- ☆49Updated 2 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆79Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago
- ECCpy is a program for EC50 calculation in python.☆44Updated last year
- ☆85Updated last year
- Set of Python scripts designed to be a dependency-free cross-platform swiss army knife for PDB files.☆26Updated 3 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆51Updated last year
- Mutation effects predicted from sequence co-variation☆66Updated 7 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆43Updated 3 years ago
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 2 months ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated 2 weeks ago