Benchmark for LLM-based Agents in Computational Biology
☆88Oct 6, 2025Updated 6 months ago
Alternatives and similar repositories for BixBench
Users that are interested in BixBench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An aviary-based data science agent based on jupyter notebooks☆44Sep 30, 2025Updated 6 months ago
- Evaluation dataset for AI systems intended to benchmark capabilities foundational to scientific research in biology☆103Sep 27, 2025Updated 6 months ago
- ☆12Jan 9, 2024Updated 2 years ago
- Protein prediction models implemented with Modal☆30Apr 7, 2026Updated last week
- This is the pipeline of our new article "Enzyme Co-Scientist: Harnessing Large Language Models for Enzyme Kinetic Data Extraction from Li…☆16May 23, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A standard library for biological research.☆34Sep 2, 2025Updated 7 months ago
- ☆91Nov 4, 2025Updated 5 months ago
- BulkFormer: A large-scale foundation model for human bulk transcriptomes☆52Dec 14, 2025Updated 4 months ago
- A motley crew of agents developed by the Monarch Initiative☆24Nov 17, 2025Updated 4 months ago
- A registry of Knowledge Graphs, their data sources, and the ways they fit together.☆24Apr 7, 2026Updated last week
- An ontology of core ecological entities☆16Dec 14, 2023Updated 2 years ago
- Genomic Biodiversity Interest Group☆20Jun 7, 2025Updated 10 months ago
- Code and example of the D-SPIN framework☆25Mar 12, 2026Updated last month
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.☆18Feb 24, 2026Updated last month
- SciQAG is a novel framework for automatically generating high-quality science question-answer pairs from a large corpus of scientific lit…☆33Mar 24, 2025Updated last year
- ☆16Jan 22, 2026Updated 2 months ago
- Biomni: a general-purpose biomedical AI agent☆2,938Apr 6, 2026Updated last week
- ☆16Sep 30, 2024Updated last year
- HIP: Hessians with Interatomic Potentials☆28Apr 3, 2026Updated last week
- De novo peptide sequencing for DDA and DIA by deep learning☆40Nov 26, 2020Updated 5 years ago
- Neural MMO - A Massively Multiagent Environment for Artificial Intelligence Research☆15May 30, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Sire Molecular Simulations Framework☆64Updated this week
- Berkeley Single Cell Computational Microscopy dataset☆18Oct 27, 2025Updated 5 months ago
- Ancestral Sequence Reconstruction in Python☆15May 9, 2019Updated 6 years ago
- Deep learning tools for peptide substrate prediction and generation☆42Nov 20, 2025Updated 4 months ago
- 该存储库，主要存放根据自己所掌握的NGS差异表达分析技术方法为主，具体的实验以及方案设计等将不会存放在此存储库。☆15May 19, 2020Updated 5 years ago
- Bad link reporter for GitHub repositories☆13Mar 25, 2024Updated 2 years ago
- ☆13Sep 26, 2024Updated last year
- Official implementation of Panacea: A foundation model for clinical trial design, recruitment, search, and summarization.☆18Dec 24, 2024Updated last year
- A toolkit for enzyme discovery☆25Mar 3, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆10May 28, 2023Updated 2 years ago
- HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.☆28Aug 23, 2025Updated 7 months ago
- Summary Dashboard for Open Biological and Biomedical Ontologies☆24Mar 8, 2026Updated last month
- ☆10Jun 24, 2023Updated 2 years ago
- ☆11Mar 11, 2018Updated 8 years ago
- ☆18Dec 2, 2025Updated 4 months ago
- Animated GIF of flow cell performance from sequencing summary file.☆13Feb 20, 2018Updated 8 years ago