Future-House / BixBenchLinks
Benchmark for LLM-based Agents in Computational Biology
☆50Updated 3 months ago
Alternatives and similar repositories for BixBench
Users that are interested in BixBench are comparing it to the libraries listed below
Sorting:
- An aviary-based data science agent based on jupyter notebooks☆35Updated 3 months ago
- ☆117Updated 3 months ago
- Evaluation dataset for AI systems intended to benchmark capabilities foundational to scientific research in biology☆83Updated last month
- reasoning model trained using GRPO towards rosetta REF2015 for protein stability☆90Updated last month
- ☆30Updated 2 years ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆87Updated 2 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆77Updated last month
- A standard library for biological research.☆28Updated 2 weeks ago
- Framework enabling modular interchange of language agents, environments, and optimizers☆105Updated last week
- A Modular Architecture for Deep Learning Systems☆44Updated 3 months ago
- ☆76Updated last week
- Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders☆193Updated this week
- ☆18Updated 6 months ago
- Robin: A multi-agent system for automating scientific discovery☆222Updated 2 months ago
- A language agent gym with challenging scientific tasks☆201Updated 2 weeks ago
- A short course on proteins and protein design aimed at early career students☆157Updated last year
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆129Updated this week
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆89Updated 3 months ago
- Combinatorial antibiotic generation☆186Updated 2 months ago
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆34Updated 9 months ago
- bioinformatics tools running on modal☆96Updated last month
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆122Updated this week
- Repository for mRNA Paper and CodonBERT publication.☆134Updated last year
- A scientific reasoning model, dataset, and reward functions for chemistry.☆129Updated 2 months ago
- Collection of mRNA benchmarks☆30Updated 3 weeks ago
- Large language models as universal biomedical simulators☆20Updated last year
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆53Updated last week
- ProtMamba: a homology-aware but alignment-free protein state space model☆78Updated 3 months ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆99Updated 2 years ago
- CRISPSR-GPT LLM Agent Public Welcome Page☆96Updated last month