Future-House / BixBenchLinks
Benchmark for LLM-based Agents in Computational Biology
☆46Updated last month
Alternatives and similar repositories for BixBench
Users that are interested in BixBench are comparing it to the libraries listed below
Sorting:
- Evaluation dataset for AI systems intended to benchmark capabilities foundational to scientific research in biology☆66Updated last month
- An aviary-based data science agent based on jupyter notebooks☆34Updated last month
- ☆113Updated last month
- reasoning model trained using GRPO towards rosetta REF2015 for protein stability☆85Updated last month
- A virtual lab of LLM agents for science research☆185Updated last month
- A standard library for biological research.☆26Updated 3 weeks ago
- ☆30Updated 2 years ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆66Updated 5 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆74Updated last week
- ☆17Updated 4 months ago
- LitQA Eval: A difficult set of scientific questions that require context of full-text research papers to answer☆41Updated 6 months ago
- Pretraining infrastructure for multi-hybrid AI model architectures☆172Updated 2 months ago
- ☆58Updated last month
- Template for creating a BioCypher-driven knowledge graph☆12Updated last month
- Repository for mRNA Paper and CodonBERT publication.☆130Updated last year
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆29Updated 3 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆85Updated last month
- Automancer is a software application that enables researchers to design, automate, and manage their experiments.☆22Updated last year
- This is a repo for migration of CROssBAR data to the Neo4j database via BioCypher☆9Updated 3 months ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated last year
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆40Updated 4 months ago
- Framework enabling modular interchange of language agents, environments, and optimizers☆94Updated this week
- A short course on proteins and protein design aimed at early career students☆155Updated 11 months ago
- ☆14Updated 8 months ago
- The light frontend for BioChatter, in pure Python☆54Updated this week
- Inference and numerics for multi-hybrid AI model architectures☆68Updated last month
- ☆37Updated 8 months ago
- ProCyon: A multimodal foundation model for protein phenotypes☆35Updated 4 months ago
- Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders☆183Updated 5 months ago
- Large language models as universal biomedical simulators☆19Updated 11 months ago