☆29May 20, 2020Updated 5 years ago
Alternatives and similar repositories for BioinformaticsIntroduction
Users that are interested in BioinformaticsIntroduction are comparing it to the libraries listed below
Sorting:
- A basic science lab framework aimed at reproducibility and lab management.☆13Dec 3, 2025Updated 3 months ago
- toolkit to process gtf files☆17Dec 24, 2021Updated 4 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆16Dec 28, 2022Updated 3 years ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 4 years ago
- An Introductory Undergraduate course in Bioinformatics☆47Mar 2, 2021Updated 5 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Mar 10, 2026Updated last week
- Essential introductory materials to get into computational biology.☆42Jun 24, 2024Updated last year
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆25Jan 28, 2026Updated last month
- Variant Calling and Postfiltering☆11Jan 9, 2017Updated 9 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆13Oct 7, 2025Updated 5 months ago
- Code and data for the Quick Start Guide to R in Azure Machine Learning Studio.☆14Dec 5, 2014Updated 11 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 8 months ago
- Fast motif matching in R☆46Jan 24, 2024Updated 2 years ago
- Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms☆33Jul 14, 2017Updated 8 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- ☆14Aug 31, 2016Updated 9 years ago
- Tao Yan's Plot Toolkit☆12Aug 20, 2019Updated 6 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- ☆15Aug 3, 2018Updated 7 years ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Sep 22, 2017Updated 8 years ago
- Official documents of the Open Bioinformatics Foundation☆41Feb 18, 2026Updated last month
- Fast, efficient, lossless compression of fastq files☆14Jan 4, 2021Updated 5 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 3 years ago
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 5 years ago
- Model-based tumour subclonal deconvolution using population genetics☆35Dec 2, 2025Updated 3 months ago
- Docker for Bioinformatics☆20Mar 2, 2026Updated 2 weeks ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆108Nov 22, 2022Updated 3 years ago
- Gaussian imputation of GWAS summary statistics☆15Apr 16, 2015Updated 10 years ago
- A MinION-based pipeline for tracking species biodiversity☆13Feb 19, 2024Updated 2 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- Build SVG Custom User Interface in R, rmd, qmd and Shiny☆20Apr 10, 2025Updated 11 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Color DNA/RNA bases in terminal output☆21Aug 29, 2017Updated 8 years ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated 10 months ago
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Oct 13, 2016Updated 9 years ago
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆15Jan 14, 2022Updated 4 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Apr 30, 2021Updated 4 years ago
- A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)☆20Mar 4, 2026Updated 2 weeks ago