TARDIS: Topological Algorithms for Robust DIscovery of Singularities
☆44Jul 28, 2023Updated 2 years ago
Alternatives and similar repositories for TARDIS
Users that are interested in TARDIS are comparing it to the libraries listed below
Sorting:
- This is material written for the masterclass Numerical and Analytical Methods for Spatially-Extended Neurobiological Networks, held at th…☆19May 23, 2024Updated last year
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Jun 1, 2021Updated 4 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆19Feb 9, 2022Updated 4 years ago
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- Information-based dimensionality reduction☆29Dec 14, 2024Updated last year
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- A topological machine learning framework based on PyTorch☆202Feb 11, 2026Updated 2 weeks ago
- pCMF R package☆14Apr 16, 2019Updated 6 years ago
- Class of data structures that can be unfolded.☆22Jan 6, 2026Updated last month
- Convert TCR gene names☆15Dec 26, 2025Updated 2 months ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 6 years ago
- ☆18Nov 18, 2025Updated 3 months ago
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- Implementation of experiments from The No Free Lunch Theorem, Kolmogorov Complexity, and the Role of Inductive Biases in Machine Learning☆17May 14, 2023Updated 2 years ago
- ☆19Oct 26, 2021Updated 4 years ago
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Dec 8, 2022Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆46Jul 19, 2024Updated last year
- ☆29Sep 4, 2023Updated 2 years ago
- ☆22Aug 25, 2022Updated 3 years ago
- Fast phenograph, CyTOF☆26Aug 19, 2022Updated 3 years ago
- A bad XML parser☆22Sep 2, 2024Updated last year
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆61Aug 30, 2022Updated 3 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆62Feb 1, 2021Updated 5 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25May 14, 2023Updated 2 years ago
- K-mer Counting for Biological Sequence Analysis☆28Jan 23, 2026Updated last month
- Parallel reduction of boundary matrices for Persistent Homology with CUDA☆32Aug 12, 2021Updated 4 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆119Feb 24, 2026Updated last week
- This project helps to detect the mathematical formula from the given picture and the same formula is extracted and converted into the lat…☆12Oct 13, 2021Updated 4 years ago
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆42Nov 22, 2024Updated last year
- ☆12Mar 13, 2025Updated 11 months ago
- utilities☆15Jul 2, 2013Updated 12 years ago
- density-based clustering for exploratory data analysis based on multi-parameter persistence☆43Jul 20, 2025Updated 7 months ago
- Simulating single-cell data using gene regulatory networks 📠☆78Feb 21, 2024Updated 2 years ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Jul 11, 2025Updated 7 months ago
- The framework for inferring Langevin dynamics from spike data☆49Feb 23, 2026Updated last week
- Machine Learning for Healthcare☆10Mar 28, 2020Updated 5 years ago