victorskl / genomic-bigdata-spark

Related projects: ⓘ

• clara-parabricks-workflows / parabricks-wdl
  Accelerated genomics workflows in the Workflow Description Language
  ☆27Updated 5 months ago
• databricks-industry-solutions / glow-solution-accelerator
  Genome-wide association studies identify genetic variations associated with a target disease or trait. Researchers and clinicians can use…
  ☆11Updated 5 months ago
• jtnystrom / Discount
  Very large scale k-mer counting and analysis on Apache Spark.
  ☆17Updated 7 months ago
• databricks / genomics-pipelines
  secondary analysis pipelines parallelized with apache spark
  ☆15Updated 2 years ago
• RobersonLab / motif_scraper
  Tool for finding matches to degenerate sequence motifs in FASTA files.
  ☆12Updated 6 months ago
• NikolayOskolkov / LSTMNeanderthalDNA
  Implementation of LSTM for detecting regions of Neanderthal introgression in modern human genomes
  ☆9Updated 4 years ago
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆19Updated 4 months ago
• jnoms / virID
  Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.
  ☆11Updated 4 years ago
• nh2tran / DeepNovoAA
  DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.
  ☆10Updated 3 years ago
• opentargets / OnToma
  Map your disease and phenotype terms to the Open Targets platform ontology
  ☆20Updated last month
• HallLab / pandas-genomics
  Pandas ExtensionDtypes for dealing with genomics data
  ☆47Updated last year
• fmfi-compbio / coral-basecaller
  ☆13Updated 3 years ago
• NeuroCSUT / ViraMiner
  CNN based classifier for detecting viral sequences among metagenomic contigs
  ☆30Updated 4 years ago
• OHDSI / Genomic-CDM
  Repository for development of the genomic module of the CDM.
  ☆19Updated 5 years ago
• ga4gh-beacon / beacon-v2
  Unified repository for the GA4GH Beacon v2 API standard
  ☆23Updated last week
• millanp95 / DeLUCS
  This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.
  ☆24Updated 2 years ago
• waldronlab / AppStatBio
  Applied Statistics for High-Throughput Biology
  ☆16Updated last month
• awslabs / linter-rules-for-nextflow
  Linter rules for Nextflow DSL scripts
  ☆28Updated last week
• meren / BLAST-filtering-pipeline
  A very simple BLAST filtering pipeline
  ☆18Updated 10 years ago
• johnbachman / famplex
  Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
  ☆12Updated 3 years ago
• cement-head / GPU-Bioinformatics
  Listing of GPU based bioinformatics software & sites & publications
  ☆10Updated 2 years ago
• IntelLabs / Open-Omics-Acceleration-Framework
  Intel lab's open sourced data science framework for accelerating digital biology
  ☆36Updated 2 weeks ago
• ahoarfrost / fastBio
  Deep learning library for biological sequences. Extension of Fastai and Pytorch.
  ☆40Updated last month
• clara-genomics / racon-gpu
  ☆32Updated this week
• dnanexus / wdlTools
  WDL tools for parsing, type-checking, and more
  ☆23Updated last month
• hms-dbmi / hail-on-AWS-spot-instances
  An option to spin cost effective EMR clusters in AWS with Hail and JupyterNotebook installed
  ☆16Updated 4 years ago
• vinisalazar / BioProv
  A provenance library for bioinformatics workflows 🧬 🔀 📝
  ☆13Updated 2 years ago
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 3 years ago
• lrgr / multifactorial-immune-response
  Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features
  ☆14Updated 6 years ago
• hammerlab / pageant
  Parallel Genomic Analysis Toolkit
  ☆14Updated 5 years ago