sparkblastproject / v2
SparkBLAST is a parallelization of a sequence alignment application (BLAST) that employs cloud computing for the provisioning of computational resources and Apache Spark as the coordination framework. Here you will find suplementary material to the article entitled "SparkBLAST: Scalable BLAST processing using in-memory operations", submitted to …
☆9Updated 7 years ago
Alternatives and similar repositories for v2:
Users that are interested in v2 are comparing it to the libraries listed below
- Pandas ExtensionDtypes for dealing with genomics data☆47Updated 3 months ago
- MOVIS: A Multi-Omics Software Solution for Multi-modal Time-Series Clustering, Embedding, and Visualizing Tasks, by Aleksandar Anžel, Dom…☆10Updated 2 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- Efficiently keep track of changes to genomes☆38Updated 6 months ago
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆68Updated 2 years ago
- Genomic BigData Warehousing with Apache Spark and LakeHouse Architecture☆11Updated 2 years ago
- Snakemake-like pipeline manager for reproducible Jupyter Notebooks☆17Updated 3 years ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Updated 3 years ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Updated 3 years ago
- Explore biomolecular pathways in Reactome from the command-line or a Python script☆22Updated 4 months ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated last year
- Data stories☆10Updated 6 years ago
- Batch scripts curating BioRxiv and PubMed articles by using Altmetric score.☆11Updated 4 years ago
- The Baseline Site Selection Tool implements simulation tools for clinical trial enrollment.☆18Updated 2 years ago
- Here I show how to use Deep Learning for biological and biomedical Data Integration.☆11Updated 4 years ago
- Proteins as words, genomes as documents.☆20Updated 4 years ago
- Teaching data science☆8Updated 8 years ago
- bioinformatics visualization tools with pyviz/bokeh☆20Updated last year
- Deep learning based alignment-free method for protein family modeling and prediction☆16Updated 6 years ago
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆40Updated 6 months ago
- ☆21Updated 7 years ago
- Build and test new apps for the KBase platform☆28Updated 9 months ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆16Updated last year
- Python framework for multi-parameter optimization and evaluation of protein folding models☆16Updated 3 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 6 years ago
- Search public databases for given genotypic information☆11Updated 6 years ago
- A mini-framework to build and train neural networks for molecular biology.☆10Updated 6 years ago
- International BioHackathon Directory of Events, Projects and Communities☆10Updated last week
- A project to capture biological pathway data from academic papers☆29Updated 2 weeks ago