Alternatives and similar repositories for v2

Users that are interested in v2 are comparing it to the libraries listed below

• HUBioDataLab / CROssBARv2
  This is a repo for migration of CROssBAR data to the Neo4j database via BioCypher
  ☆9Updated 2 months ago
• verilylifesciences / site-selection-tool
  The Baseline Site Selection Tool implements simulation tools for clinical trial enrollment.
  ☆18Updated 2 years ago
• MaayanLab / appyter
  jinja2-enabled jupyter notebooks
  ☆37Updated this week
• HallLab / pandas-genomics
  Pandas ExtensionDtypes for dealing with genomics data
  ☆47Updated 3 weeks ago
• Imamachi-n / BioRxivCurator
  Batch scripts curating BioRxiv and PubMed articles by using Altmetric score.
  ☆11Updated 5 years ago
• kbase / kb_sdk
  Build and test new apps for the KBase platform
  ☆28Updated 4 months ago
• krassowski / nbpipeline
  Snakemake-like pipeline manager for reproducible Jupyter Notebooks
  ☆17Updated 3 years ago
• johnbachman / famplex
  Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
  ☆12Updated 4 years ago
• unlearnai / genemunge
  Tools for munging genomic data
  ☆21Updated 5 years ago
• AAnzel / MOVIS
  MOVIS: A Multi-Omics Software Solution for Multi-modal Time-Series Clustering, Embedding, and Visualizing Tasks, by Aleksandar Anžel, Dom…
  ☆10Updated 3 years ago
• sbl-sdsc / mmtf-pyspark
  Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
  ☆68Updated 2 years ago
• hammerlab / pageant
  Parallel Genomic Analysis Toolkit
  ☆14Updated 6 years ago
• biocypher / biochatter-next
  The advanced implementation for BioChatter, using Next.js
  ☆13Updated 5 months ago
• AllenCellModeling / AllenCellModeling.github.io
  Data stories
  ☆10Updated 7 years ago
• Novartis / peax
  Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…
  ☆68Updated 2 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 10 months ago
• NikolayOskolkov / DeepLearningDataIntegration
  Here I show how to use Deep Learning for biological and biomedical Data Integration.
  ☆11Updated 4 years ago
• Stemanz / restring
  Functional enrichment terms aggregator
  ☆18Updated last year
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated 3 months ago
• upsetjs / upsetjs_jupyter_widget
  😠 Jupyter Widget bindings for UpSet.js for rendering UpSet plots, Euler, and Venn Diagrams
  ☆14Updated 3 years ago
• Edinburgh-Genome-Foundry / Caravagene
  🎨 Python library to plot multi-part genetic constructs
  ☆25Updated 2 months ago
• phiweger / nanotext
  Proteins as words, genomes as documents.
  ☆20Updated 4 years ago
• tiagoantao / data-science-teaching
  Teaching data science
  ☆8Updated 8 years ago
• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆17Updated last year
• biocypher / project-template
  Template for creating a BioCypher-driven knowledge graph
  ☆12Updated 3 weeks ago
• bhi-kimlab / DeepFam
  Deep learning based alignment-free method for protein family modeling and prediction
  ☆16Updated 6 years ago
• ginkgobioworks / edge
  Efficiently keep track of changes to genomes
  ☆38Updated 11 months ago
• dvklopfenstein / ReactomePy
  Explore biomolecular pathways in Reactome from the command-line or a Python script
  ☆24Updated 8 months ago
• ramzan1990 / sequence2vec
  ☆21Updated 8 years ago
• rasbt / screenlamp
  screenlamp is a Python toolkit for hypothesis-driven virtual screening
  ☆24Updated 7 years ago