Alternatives and similar repositories for platform-pipe

Users that are interested in platform-pipe are comparing it to the libraries listed below

• opentargets / issues
  Issue tracker for Open Targets Platform and Open Targets Genetics Portal
  ☆12Updated 2 months ago
• geneontology / helpdesk
  The Gene Ontology Helpdesk
  ☆16Updated 4 months ago
• BioInterchange / Ontologies
  Home of the Genomic Feature and Variation Ontology (GFVO)
  ☆16Updated 4 years ago
• AbbVie-ComputationalGenomics / genetic-evidence-approval
  ☆24Updated 4 years ago
• opentargets / OnToma
  Map your disease and phenotype terms to the Open Targets platform ontology
  ☆21Updated 6 months ago
• IEDB / ONTIE
  Ontology for Immune Epitopes
  ☆13Updated 4 months ago
• greenelab / generic-expression-patterns
  Distinguishing between generic and experiment-specific gene expression signals.
  ☆12Updated 2 years ago
• Caleydo / ordino
  Target discovery platform for exploring rankings of genes, disease models, and other entities. @JKU-ICG @datavisyn
  ☆12Updated last year
• fulcrumgenomics / dagr
  A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs
  ☆69Updated 3 years ago
• monarch-initiative / monarchr
  R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.
  ☆14Updated this week
• opentargets-archive / genetics-app
  Open Targets Genetics UI
  ☆14Updated 4 months ago
• auerbachs / BMDExpress-2
  Software for analyzing high dimensional dose-response data
  ☆19Updated 9 months ago
• opentargets-archive / data_pipeline
  Code for the data processing pipeline
  ☆17Updated 3 years ago
• AlexsLemonade / RNA-Seq-Exercises
  Exercises for training scientists to perform some RNA-seq analyses.
  ☆11Updated 5 years ago
• NCATSTranslator / TranslatorEngineering
  ☆10Updated last month
• opentargets-archive / library-beam
  Open Targets Library ETL Pipeline | Apache Beam
  ☆16Updated 4 years ago
• NCATSTranslator / ReasonerAPI
  NCATS Biomedical Translator Reasoners Standard API
  ☆36Updated this week
• bigdatagenomics / bdg-formats
  Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
  ☆40Updated 3 months ago
• hammerlab / pageant
  Parallel Genomic Analysis Toolkit
  ☆14Updated 6 years ago
• monarch-initiative / monarch-disease-ontology-RETIRED
  THIS IS THE OLD REPO: Use this one instead: https://github.com/monarch-initiative/mondo-build
  ☆17Updated 4 years ago
• DataBiosphere / azul
  Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP
  ☆8Updated this week
• geneontology / go-announcements
  Announcements related to ontology changes that may impact groups using GO, such as obsoletions, merges, etc.
  ☆14Updated 2 years ago
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆15Updated 2 years ago
• ENCODE-DCC / snovault
  The SnoVault general purpose hybrid object-relational database
  ☆16Updated last year
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆47Updated this week
• sorgerlab / famplex
  Resources for grounding protein families and complexes from text and describing their hierarchical relationships.
  ☆18Updated 10 months ago
• kbase / kb_sdk
  Build and test new apps for the KBase platform
  ☆28Updated 3 months ago
• MaayanLab / appyter
  jinja2-enabled jupyter notebooks
  ☆37Updated last week
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆22Updated 3 months ago