czbiohub-sf / excellxgene
☆11Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for excellxgene
- AnnData interoperability in R☆60Updated last week
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆23Updated 5 months ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 3 years ago
- Scripts for using scanpy☆31Updated 3 months ago
- Code and documentation for the curation of cellxgene datasets☆38Updated this week
- .h5mu files interface for Seurat☆26Updated 11 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆50Updated 3 months ago
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- ☆40Updated 3 weeks ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆40Updated 3 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆57Updated 11 months ago
- Explore and download data from the recount3 project☆31Updated 6 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆56Updated 8 months ago
- ☆39Updated last week
- Geometry-preserving random sampling☆75Updated 3 weeks ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆54Updated 3 years ago
- Annotated multivariate observation data in R☆43Updated last week
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆43Updated 9 months ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆25Updated 4 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆27Updated last month
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- epigenome analysis to rank transcription factors☆30Updated last year
- ☆12Updated 5 years ago
- ☆34Updated 6 months ago
- Full annotation using shape-constrained trees☆25Updated last year
- Multi-omics studies are available here☆51Updated 2 years ago
- ☆29Updated last year