cytomining / cytominer-database

Related projects ⓘ

Alternatives and complementary repositories for cytominer-database

• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆49Updated 6 months ago
• piximi / application_archived
  A web application for classifying objects
  ☆29Updated 2 years ago
• insitro / AllelicSeries
  Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…
  ☆12Updated this week
• VariantEffect / mavehgvs
  A specification and Python implementation for representing variants from Multiplexed Assays of Variant Effect.
  ☆11Updated 10 months ago
• Caleydo / ordino
  Target discovery platform for exploring rankings of genes, disease models, and other entities. @JKU-ICG @datavisyn
  ☆12Updated 8 months ago
• IDR / idr-notebooks
  Jupyter Notebooks for the Image Data Resource
  ☆18Updated 2 years ago
• boutroslab / HTSvis
  A web app for exploratory data analysis of high-throughput screens (HTS)
  ☆17Updated 6 years ago
• jananiravi / compbio-gists
  Computational Biology & Bioinformatics Resources
  ☆12Updated last year
• selcukorkmaz / geneSurv
  geneSurv: an interactive web-based tool for survival analysis in genomics research
  ☆19Updated 4 years ago
• AlexsLemonade / RNA-Seq-Exercises
  Exercises for training scientists to perform some RNA-seq analyses.
  ☆11Updated 5 years ago
• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆10Updated this week
• BioPAX / paxtoolsr
  The package provides a set of R functions for interacting with BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) mole…
  ☆10Updated last year
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• shahcompbio / MultiModalMuSig.jl
  A Julia package for extracting mutation signatures using topic models
  ☆18Updated 2 years ago
• HelikarLab / CancerDiscover
  Open-source software pipeline for cancer classification from high-throughput data using machine learning.
  ☆18Updated 5 years ago
• tare / Splotch
  Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data
  ☆17Updated 2 weeks ago
• greenelab / generic-expression-patterns
  Distinguishing between generic and experiment-specific gene expression signals.
  ☆12Updated last year
• sbenz / Paradigm
  PAthway Representation and Analysis by Direct Inference on Graphical Models
  ☆45Updated 6 years ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆58Updated last month
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆37Updated 6 months ago
• broadinstitute / gene-hints
  Discoverability for gene search
  ☆12Updated last year
• merfishtools / merfishtools
  MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…
  ☆14Updated 5 years ago
• andrewcharlesjones / cplvm
  Contrastive Poisson latent variable models (CPLVMs)
  ☆11Updated 2 years ago
• NCBI-Hackathons / PrecisionMedicineToolkit
  Search public databases for given genotypic information
  ☆10Updated 6 years ago
• rnabioco / practical-data-analysis
  Short course using RStudio for biological data analysis
  ☆13Updated 2 years ago
• burkesquires / immunology-informatics
  Immunology Informatics - Big Data Analysis in Immunology - Tutorials
  ☆21Updated 7 years ago
• biswapriyamisra / metabolomics
  Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016
  ☆12Updated 4 years ago
• bglnelissen / slideToolkit
  slideToolkit: a free toolset for analyzing full size virtual histology slides
  ☆11Updated 5 months ago
• calico / impulse
  Fit phenomenological sigmoid and impulse curves with priors to improve interpretability
  ☆10Updated 5 months ago