cytomining / cytominer-databaseLinks
[DEPRECATED] A package for storing morphological profiling data.
☆10Updated 8 months ago
Alternatives and similar repositories for cytominer-database
Users that are interested in cytominer-database are comparing it to the libraries listed below
Sorting:
- Methods for Image-Based Cell Profiling☆51Updated last year
- A web app for exploratory data analysis of high-throughput screens (HTS)☆17Updated 6 years ago
- Jupyter Notebooks for the Image Data Resource☆18Updated 2 years ago
- Target discovery platform for exploring rankings of genes, disease models, and other entities. @JKU-ICG @datavisyn☆12Updated last year
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆13Updated 2 months ago
- TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…☆15Updated 2 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Updated 5 years ago
- ☆15Updated 2 years ago
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated 2 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated last week
- A specification and Python implementation for representing variants from Multiplexed Assays of Variant Effect.☆11Updated last month
- The package provides a set of R functions for interacting with BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) mole…☆10Updated 2 years ago
- R package for differential discovery analyses in high-dimensional cytometry data☆20Updated 4 months ago
- Efficient data structures and IO for whole slide image analysis☆13Updated this week
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆9Updated 2 years ago
- ☆12Updated 9 months ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11Updated 5 years ago
- Fit phenomenological sigmoid and impulse curves with priors to improve interpretability☆10Updated last year
- The Cancer bioMarker Prediction Pipeline (CAMPP)☆17Updated 4 years ago
- ☆15Updated 9 months ago
- Image-based Profiling Handbook☆12Updated 2 months ago
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Updated 2 years ago
- A web application for classifying objects☆29Updated 3 years ago
- Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features☆14Updated 6 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆38Updated last year
- A Julia package for extracting mutation signatures using topic models☆18Updated 3 years ago
- CytoData 2016 – origin story☆18Updated 7 years ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆10Updated 3 months ago