Alternatives and similar repositories for paxtoolsr:

Users that are interested in paxtoolsr are comparing it to the libraries listed below

• lawremi / rtracklayer
  R interface to genome annotation files and the UCSC genome browser
  ☆32Updated 3 weeks ago
• BaderLab / EnrichmentMapApp
  The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
  ☆34Updated 6 months ago
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆19Updated 2 years ago
• jananiravi / compbio-gists
  Computational Biology & Bioinformatics Resources
  ☆14Updated 2 years ago
• addgene / openbio
  A collection of open source bioinformatics tools developed and used by Addgene.
  ☆10Updated last month
• biswapriyamisra / metabolomics
  Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016
  ☆12Updated 5 years ago
• saezlab / SLAPenrich
  Sample Level Analysis of Pathway Alteration Enrichments
  ☆9Updated 6 years ago
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆38Updated 11 months ago
• mghandi / gkmSVM
  gkmSVM R package
  ☆17Updated 7 years ago
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆22Updated 2 months ago
• mnsmar / clipseqtools
  A suite for the analysis of CLIP-Seq datasets.
  ☆12Updated 3 years ago
• datapplab / SBGNview
  ☆26Updated 2 years ago
• uzh / ezRun
  An R meta-package for the analysis of Next Generation Sequencing data
  ☆25Updated this week
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• SchulzLab / EpigenomicsTutorial-ISMB2017
  Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague
  ☆14Updated 4 years ago
• ding-lab / somaticwrapper
  Detect somatic variants from tumor and normal WGS/WXS data
  ☆15Updated last month
• Kayla-Morrell / CreateAPackage
  The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…
  ☆11Updated 4 years ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆23Updated 4 years ago
• waldronlab / GSEABenchmarkeR
  Reproducible GSEA Benchmarking
  ☆13Updated 5 months ago
• VariantEffect / mavehgvs
  A specification and Python implementation for representing variants from Multiplexed Assays of Variant Effect.
  ☆11Updated 2 weeks ago
• HTGenomeAnalysisUnit / nf-pipeline-regenie
  GWAS and rare variants tests at high speed using regenie
  ☆13Updated 4 months ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆50Updated 5 years ago
• sbenz / Paradigm
  PAthway Representation and Analysis by Direct Inference on Graphical Models
  ☆44Updated 7 years ago
• jokergoo / IlluminaHumanMethylationEPICv2anno.20a1.hg38
  ☆14Updated last year
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 6 months ago
• SilasK / ipath3
  Python wrapper for ipath3
  ☆10Updated last year
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆18Updated 3 months ago
• liulab-dfci / CHIPS
  A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
  ☆20Updated 3 years ago
• xiaosaiyao / epiregulon
  inference of transcription factor activity at the single cell level
  ☆14Updated 3 weeks ago
• AstraZeneca / Omicsfold
  Multi-omics data normalisation, model fitting and visualisation.
  ☆25Updated 2 years ago