Alternatives and similar repositories for paxtoolsr:

Users that are interested in paxtoolsr are comparing it to the libraries listed below

• lawremi / rtracklayer
  R interface to genome annotation files and the UCSC genome browser
  ☆31Updated this week
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆39Updated 10 months ago
• biswapriyamisra / metabolomics
  Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016
  ☆12Updated 5 years ago
• saezlab / SLAPenrich
  Sample Level Analysis of Pathway Alteration Enrichments
  ☆9Updated 6 years ago
• cole-trapnell-lab / cicero
  ☆12Updated last year
• datapplab / SBGNview
  ☆26Updated last year
• BaderLab / EnrichmentMapApp
  The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
  ☆34Updated 5 months ago
• mghandi / gkmSVM
  gkmSVM R package
  ☆17Updated 7 years ago
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆21Updated last month
• sysbio-curie / Logical_modelling_pipeline
  Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…
  ☆9Updated 5 years ago
• mnsmar / clipseqtools
  A suite for the analysis of CLIP-Seq datasets.
  ☆12Updated 3 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 5 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• jananiravi / compbio-gists
  Computational Biology & Bioinformatics Resources
  ☆14Updated last year
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆24Updated last year
• neilfws / utils4bioinformatics
  Little code snippets that do (hopefully) useful things
  ☆23Updated last year
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆22Updated 3 years ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 3 years ago
• RGLab / FAUST
  Full annotation using shape-constrained trees
  ☆25Updated last year
• liuqivandy / scRNABatchQC
  ☆12Updated 3 years ago
• jokergoo / BioMartGOGeneSets
  Gene Ontology Gene Sets from BioMart
  ☆12Updated last year
• xzhoulab / DRComparison
  Comparison of dimensionality reduction methods
  ☆30Updated 4 years ago
• cwieder / py-ssPA
  Single sample pathway analysis tools for omics data
  ☆12Updated 4 months ago
• hms-dbmi / dseqr
  single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
  ☆20Updated 4 months ago
• nghiavtr / BPSC
  Beta-Poisson model for single-cell RNA-seq data analyses
  ☆16Updated 6 years ago
• ding-lab / somaticwrapper
  Detect somatic variants from tumor and normal WGS/WXS data
  ☆15Updated 2 weeks ago
• waldronlab / GSEABenchmarkeR
  Reproducible GSEA Benchmarking
  ☆13Updated 4 months ago
• shahcompbio / MultiModalMuSig.jl
  A Julia package for extracting mutation signatures using topic models
  ☆18Updated 3 years ago
• cancerdatasci / demeter
  Deconvolution of seed effects from gene effects in large scale RNAi screens
  ☆10Updated 6 years ago