cumc / xqtl-protocol
Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
☆41Updated last week
Related projects ⓘ
Alternatives and complementary repositories for xqtl-protocol
- Enhanced version of the FastQTL QTL mapper☆56Updated last year
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆61Updated 2 weeks ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆45Updated last week
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆29Updated 9 months ago
- ☆42Updated last week
- Sequence kernel association test (SKAT)☆42Updated 11 months ago
- ☆24Updated 4 years ago
- methods for functional summary-based imputation☆75Updated 2 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆32Updated 3 months ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆26Updated 3 months ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆10Updated 2 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 3 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆47Updated last month
- An accurate and efficient HLA imputation method.☆26Updated last year
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆61Updated last year
- ☆32Updated 3 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆48Updated 10 months ago
- Colocalization analysis of genetic association signals☆47Updated this week
- Scripts to run mQTL analyses as described in the ARIES mQTL paper☆9Updated 8 years ago
- Visualization of Colocalization Between eQTL and GWAS Data☆76Updated 2 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆21Updated 3 months ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- GitHub site to accompany Textbook Introduction to Statistical Genetic Data Analysis☆27Updated 4 years ago
- Fast, integrative fine mapping with functional data☆55Updated 5 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- Burden testing against public controls☆50Updated 8 months ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆40Updated 3 years ago
- ☆20Updated 7 months ago
- Tutorial Website☆53Updated 3 years ago
- Easily download publicly available GWAS summary statistics.☆72Updated 11 months ago