encore-similarity / encoreView external linksLinks
An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculating covariance matrices, ensemble similarities, entropy and conducting PCA analyses.
☆16Jul 20, 2018Updated 7 years ago
Alternatives and similar repositories for encore
Users that are interested in encore are comparing it to the libraries listed below
Sorting:
- Analysis of Molecular Dynamics output in the IPython Notebook☆10Jan 24, 2017Updated 9 years ago
- a quick primer on making prettier (and more impactful) plots☆14Sep 27, 2015Updated 10 years ago
- Examples and data for performing path similarity analysis (PSA).☆17Oct 23, 2015Updated 10 years ago
- Home of the public Martini 3 lipid parameters☆18Sep 29, 2025Updated 4 months ago
- RNA-Seq Unified Mapper☆27Sep 9, 2022Updated 3 years ago
- Applying IDR analysis to Homer peaks.☆15May 8, 2020Updated 5 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Jan 6, 2026Updated last month
- Estimation of pairwise distances under a probabilistic framework☆11Aug 11, 2023Updated 2 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- NGS perl modules☆11Feb 4, 2026Updated last week
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 9 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 3 years ago
- gvcf aggregation tool☆12Feb 7, 2018Updated 8 years ago
- Python bindings for TNG file format☆13Oct 14, 2025Updated 4 months ago
- An application to remove PCR duplicates from high throughput sequencing runs.☆11Apr 22, 2018Updated 7 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- ☆11Jan 23, 2019Updated 7 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 3 years ago
- Molecular kaleidoscope☆15Apr 11, 2018Updated 7 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- A software research tool for the analysis of structural communication in protein ensembles☆14Mar 24, 2022Updated 3 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 6 years ago
- ☆12Jan 21, 2016Updated 10 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 5 years ago
- Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation☆13Dec 2, 2022Updated 3 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- ML-based molecular representation models using PyTorch☆16Aug 11, 2025Updated 6 months ago
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 6 years ago
- An interactive Shiny web application for genomic interval enrichment analysis using LOLA.☆16Apr 17, 2022Updated 3 years ago
- example applications built using bíogo☆18Apr 19, 2021Updated 4 years ago
- A Modern Perl Framework for High Throughput Sequencing analysis☆17May 6, 2020Updated 5 years ago
- ☆15Oct 19, 2023Updated 2 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 5 months ago
- ☆13Dec 18, 2019Updated 6 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 8 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆17Aug 23, 2022Updated 3 years ago