Enhancing Gene Set Overrepresentation Analysis with Large Language Models
☆11Mar 17, 2025Updated last year
Alternatives and similar repositories for llm2geneset
Users that are interested in llm2geneset are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14May 28, 2014Updated 12 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast API server for calculating linkage disequilibrium☆20Apr 24, 2025Updated last year
- Just the leafviz parts of Leafcutter☆16Apr 2, 2026Updated 6 months ago
- A straightforward and complete next-generation sequencing read simulator☆22Feb 18, 2024Updated 2 years ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Jul 24, 2026Updated 2 months ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- An automatic web tool for phylogenetic inference of animal/palnt orthogroups under purposeful taxonomic sampling☆10Sep 29, 2026Updated 2 weeks ago
- The official repository for the ARSENAL model☆21Jul 3, 2026Updated 3 months ago
- OligoGym is a python package that streamlines processes involving featurization, training and evaluation of predictive models of oligonuc…☆24Feb 11, 2026Updated 8 months ago
- Species-aware DNA language modeling☆19Jan 25, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…☆12Jan 24, 2025Updated last year
- ☆12Jan 18, 2023Updated 3 years ago
- Data Analysis For FLAM-Seq Third Generation RNA Sequencing☆10Jan 22, 2022Updated 4 years ago
- Minimal scripts to reproduce the RADICL-seq analysis of the Nature Communications manuscript☆11Jan 30, 2020Updated 6 years ago
- An R package to conveniently run DESeq2, edgeR, and QNB for the detection of differential methylation in MeRIP/m6A-seq data.☆15Jan 15, 2020Updated 6 years ago
- (WIP) best-practices workflow for rare disease☆64Jul 1, 2024Updated 2 years ago
- Scripts to generate and analyze afdb clusters☆11Sep 15, 2023Updated 3 years ago
- ☆10Aug 21, 2026Updated last month
- A web scrapping method to extract journal information from PubMed and Google Scholar using Python.☆38Oct 23, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆22Aug 7, 2023Updated 3 years ago
- ☆13May 2, 2018Updated 8 years ago
- Protein Sequence Evolutionary Information Language Model☆14Oct 5, 2023Updated 3 years ago
- Python client for the Open Targets REST API at targetvalidation.org☆26Aug 22, 2025Updated last year
- ☆32Aug 25, 2026Updated last month
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆31Feb 9, 2025Updated last year
- Scoring alignments by embedding vector similarity☆15Jul 17, 2026Updated 3 months ago
- KnetMiner - webapp to search and visualize genome-scale knowledge graphs☆33Aug 26, 2026Updated last month
- memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort☆29Jan 25, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 3 years ago
- Common Workflow Language definition files for workflows introduced in DAT2☆11May 23, 2022Updated 4 years ago
- ☆10Jul 6, 2024Updated 2 years ago
- Create cell sentences from sequencing data☆23Aug 12, 2024Updated 2 years ago
- Emending Alignment of Spliced Transcript Reads☆13Jan 19, 2026Updated 8 months ago
- ☆11Apr 22, 2022Updated 4 years ago
- ☆96Jul 23, 2026Updated 2 months ago