Alternatives and similar repositories for moFF:

Users that are interested in moFF are comparing it to the libraries listed below

• statisticalbiotechnology / diffacto
  ☆13Updated 10 months ago
• msproteomicstools / msproteomicstools
  Some hopefully useful tools for mass spectrometry applied to proteomics
  ☆52Updated 3 years ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆34Updated last week
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated last month
• jessegmeyerlab / proteomics-tutorial
  ☆56Updated 8 months ago
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆21Updated 3 weeks ago
• IFIproteomics / LFQbench
  ☆24Updated last year
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆80Updated 3 months ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆32Updated 9 months ago
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆19Updated 2 months ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆27Updated 6 months ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆46Updated this week
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆39Updated 8 months ago
• RASpicer / MetabolomicsTools
  ☆55Updated 3 years ago
• verilylifesciences / deepmass
  DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.
  ☆47Updated 3 years ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆78Updated 10 months ago
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆40Updated last week
• ursgal / ursgal
  Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
  ☆42Updated 10 months ago
• MarcIsak / MSLibrarian
  MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics
  ☆14Updated 2 years ago
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆26Updated last year
• fickludd / dinosaur
  Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.
  ☆43Updated 2 years ago
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆44Updated last week
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆64Updated last year
• cbielow / PTXQC
  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
  ☆42Updated 3 weeks ago
• bigbio / pmultiqc
  A library for QC report based on MultiQC framework
  ☆14Updated 2 months ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆42Updated 3 weeks ago
• Nesvilab / IonQuant
  A label free quantification tool.
  ☆16Updated 8 months ago
• RogerGinBer / RHermes
  RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
  ☆25Updated last year