Alternatives and similar repositories for galaxy-hub

Users that are interested in galaxy-hub are comparing it to the libraries listed below

• galaxyproject / bioblend
  A Python library for interacting with the Galaxy API
  ☆90Updated last week
• galaxyproject / planemo
  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…
  ☆93Updated last week
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆101Updated this week
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆150Updated 4 months ago
• galaxyproject / iwc
  Galaxy Workflows maintained by the Intergalactic Workflow Commission
  ☆34Updated last week
• veg / hyphy
  HyPhy: Hypothesis testing using Phylogenies
  ☆232Updated last week
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated 3 months ago
• cmdcolin / oddgenes
  A small database of weird gene annotations
  ☆203Updated 2 weeks ago
• PacificBiosciences / ccs
  CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
  ☆119Updated last year
• bioinform / somaticseq
  An ensemble approach to accurately detect somatic mutations using SomaticSeq
  ☆196Updated last month
• sortmerna / sortmerna
  SortMeRNA: next-generation sequence filtering and alignment tool
  ☆267Updated 5 months ago
• usegalaxy-eu / ena-upload-cli
  ENA upload tool - script your Open Data upload to the European Nucleotide Archive
  ☆28Updated this week
• sanger-pathogens / Artemis
  Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the…
  ☆246Updated 11 months ago
• GoekeLab / bioinformatics-workflows
  minimal example implementations for bioinformatics workflow managers
  ☆274Updated 3 years ago
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆377Updated last year
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆186Updated last month
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆416Updated 5 months ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• fbreitwieser / krakenuniq
  🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
  ☆232Updated last year
• broadinstitute / viral-ngs
  Viral genomics analysis pipelines
  ☆194Updated 8 months ago
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…
  ☆162Updated this week
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆543Updated 10 months ago
• bgruening / galaxytools
  Galaxy Tool wrappers
  ☆118Updated last week
• usegalaxy-eu / ena-cog-uk-wfs
  Collection of scripts for automated SARS-CoV-2 genome surveillance.
  ☆23Updated last year
• galaxyproject / admin-training
  Galaxy Admin Training
  ☆61Updated 6 months ago
• galaxyproject / tools-iuc
  Tool Shed repositories maintained by the Intergalactic Utilities Commission
  ☆174Updated this week
• nf-core / viralrecon
  Assembly and intrahost/low-frequency variant calling for viral samples
  ☆137Updated this week
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆56Updated last month
• Mykrobe-tools / mykrobe
  Antibiotic resistance prediction in minutes
  ☆108Updated 6 months ago
• libnano / primer3-py
  Simple oligo analysis and primer design
  ☆176Updated 2 weeks ago