SeqOIA-IT / variantplanerLinks
A tool kit to manage many variant on desktop computer
☆13Updated 4 months ago
Alternatives and similar repositories for variantplaner
Users that are interested in variantplaner are comparing it to the libraries listed below
Sorting:
- ☆13Updated 3 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆19Updated 3 months ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Sample Contamination Estimate from VCF☆20Updated last year
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆34Updated 2 years ago
- Human mitochondrial variants annotation using HmtVar.☆18Updated 2 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- CADD-SV – a framework to score the effect of structural variants☆17Updated last week
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- ☆16Updated 10 months ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11Updated 6 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Location of public benchmarking; primarily final results☆18Updated 9 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- Whole Genome Sequenceing Structural Variation Pipelines☆17Updated 6 years ago
- ☆19Updated this week
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Basic UPD caller☆12Updated 4 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago
- Run multiple programs to check if a VCF is usable☆11Updated 5 years ago
- Tandem repeat genotyping from long reads☆18Updated last week
- ☆35Updated 4 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 7 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- ☆11Updated 2 years ago