Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
☆511Jun 7, 2024Updated last year
Alternatives and similar repositories for deepslide
Users that are interested in deepslide are comparing it to the libraries listed below
Sorting:
- Python Whole Slide Image Preprocessing☆298Nov 15, 2022Updated 3 years ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆142Aug 5, 2021Updated 4 years ago
- Classification of Lung cancer slide images using deep-learning☆528Sep 24, 2024Updated last year
- Program for the analysis and visualization of whole-slide images in digital pathology☆664Sep 12, 2023Updated 2 years ago
- ☆346Nov 21, 2021Updated 4 years ago
- Open source tools for computational pathology - Nature BME☆1,611Apr 14, 2025Updated 10 months ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆164Jul 25, 2024Updated last year
- Whole Slide Digital Pathology Image Tissue Localization☆45Oct 3, 2023Updated 2 years ago
- Library for Digital Pathology Image Processing☆442Updated this week
- Pathologist-level interpretable whole-slide cancer diagnosis with deep learning☆131Jun 25, 2019Updated 6 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆267Dec 23, 2023Updated 2 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆318Dec 10, 2025Updated 2 months ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆208Mar 7, 2019Updated 6 years ago
- DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image☆455Apr 29, 2024Updated last year
- Tools for tissue image stain normalisation and augmentation in Python 3☆348May 8, 2021Updated 4 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆53Apr 2, 2023Updated 2 years ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆509Updated this week
- Tools for computational pathology☆441Oct 24, 2025Updated 4 months ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Jun 21, 2022Updated 3 years ago
- Two-Stage Convolutional Neural Network for Breast Cancer Histology Image Classification. ICIAR 2018 Grand Challenge on BreAst Cancer Hist…☆219Oct 23, 2019Updated 6 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆22Aug 17, 2020Updated 5 years ago
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆332Aug 22, 2022Updated 3 years ago
- A Python toolkit for pathology image analysis algorithms.☆465Updated this week
- Cancer metastasis detection with neural conditional random field (NCRF)☆760Oct 3, 2023Updated 2 years ago
- Histopathology Image Analysis☆93Jul 6, 2023Updated 2 years ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆179Nov 1, 2021Updated 4 years ago
- Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)☆615Mar 19, 2024Updated last year
- Train a model to predict gene expression from histology slides.☆112Jul 6, 2022Updated 3 years ago
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆688Oct 27, 2023Updated 2 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Dec 17, 2020Updated 5 years ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Nov 22, 2022Updated 3 years ago
- The solution to cameyon16 and camelyon17 challenge and also to your own WSI data project.☆317Aug 1, 2025Updated 7 months ago
- HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)☆95Jan 15, 2020Updated 6 years ago
- An implementation of Unet for pytorch designed for digital pathology segmentation☆127Aug 23, 2022Updated 3 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆111Nov 8, 2025Updated 3 months ago
- Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…☆175Apr 1, 2022Updated 3 years ago
- Powerful, open-source AI tools for digital pathology.☆352Nov 13, 2025Updated 3 months ago
- TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification☆462May 3, 2024Updated last year
- This repository provides scripts to reproduce the results in the paper "An annotation-free whole-slide training approach to pathological …☆64Nov 19, 2021Updated 4 years ago