Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
☆515Jun 7, 2024Updated 2 years ago
Alternatives and similar repositories for deepslide
Users that are interested in deepslide are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python Whole Slide Image Preprocessing☆301Nov 15, 2022Updated 3 years ago
- Program for the analysis and visualization of whole-slide images in digital pathology☆676Sep 12, 2023Updated 2 years ago
- Classification of Lung cancer slide images using deep-learning☆533Sep 24, 2024Updated last year
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆142Aug 5, 2021Updated 4 years ago
- Whole Slide Digital Pathology Image Tissue Localization☆45Oct 3, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆349Nov 21, 2021Updated 4 years ago
- Open source tools for computational pathology - Nature BME☆1,684Apr 14, 2025Updated last year
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆167Jul 25, 2024Updated last year
- Library for Digital Pathology Image Processing☆458Jun 1, 2026Updated last week
- Pathologist-level interpretable whole-slide cancer diagnosis with deep learning☆131Jun 25, 2019Updated 6 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆54Apr 2, 2023Updated 3 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆270Dec 23, 2023Updated 2 years ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆535Updated this week
- Tools for tissue image stain normalisation and augmentation in Python 3☆349May 8, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Jun 21, 2022Updated 3 years ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆210Mar 7, 2019Updated 7 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆326Apr 13, 2026Updated last month
- Tools for computational pathology☆452Apr 14, 2026Updated last month
- DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image☆466Apr 29, 2024Updated 2 years ago
- The solution to cameyon16 and camelyon17 challenge and also to your own WSI data project.☆317Aug 1, 2025Updated 10 months ago
- Cancer metastasis detection with neural conditional random field (NCRF)☆760Oct 3, 2023Updated 2 years ago
- Two-Stage Convolutional Neural Network for Breast Cancer Histology Image Classification. ICIAR 2018 Grand Challenge on BreAst Cancer Hist…☆220Oct 23, 2019Updated 6 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆22Aug 17, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆330Aug 22, 2022Updated 3 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Dec 17, 2020Updated 5 years ago
- This repository provides scripts to reproduce the results in the paper "An annotation-free whole-slide training approach to pathological …☆62Nov 19, 2021Updated 4 years ago
- TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification☆486May 3, 2024Updated 2 years ago
- A Python toolkit for pathology image analysis algorithms.☆472Apr 6, 2026Updated 2 months ago
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆718Oct 27, 2023Updated 2 years ago
- Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)☆620Mar 19, 2024Updated 2 years ago
- Unofficial implementation for ScanNet (a fast WSI prediction method) in PyTorch.☆21Oct 3, 2023Updated 2 years ago
- 首个临床级别的 AI 系统可用源码☆69Dec 17, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆183Nov 1, 2021Updated 4 years ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Nov 22, 2022Updated 3 years ago
- Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…☆182Apr 1, 2022Updated 4 years ago
- Train a model to predict gene expression from histology slides.☆111Jul 6, 2022Updated 3 years ago
- HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)☆94Jan 15, 2020Updated 6 years ago
- Powerful, open-source AI tools for digital pathology.☆365May 7, 2026Updated last month
- base on MIL method☆13Jul 25, 2024Updated last year