Python Whole Slide Image Preprocessing
☆298Nov 15, 2022Updated 3 years ago
Alternatives and similar repositories for python-wsi-preprocessing
Users that are interested in python-wsi-preprocessing are comparing it to the libraries listed below
Sorting:
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆208Mar 7, 2019Updated 7 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆164Jul 25, 2024Updated last year
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆57Sep 25, 2023Updated 2 years ago
- Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma sli…☆515Jun 7, 2024Updated last year
- Whole Slide Digital Pathology Image Tissue Localization☆45Oct 3, 2023Updated 2 years ago
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Mar 19, 2020Updated 6 years ago
- Open source tools for computational pathology - Nature BME☆1,625Apr 14, 2025Updated 11 months ago
- ☆347Nov 21, 2021Updated 4 years ago
- Library for Digital Pathology Image Processing☆446Mar 10, 2026Updated last week
- DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image☆458Apr 29, 2024Updated last year
- 首个临床级别的 AI 系统可用源码☆69Dec 17, 2021Updated 4 years ago
- The solution to cameyon16 and camelyon17 challenge and also to your own WSI data project.☆317Aug 1, 2025Updated 7 months ago
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆30Sep 30, 2020Updated 5 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Jun 21, 2022Updated 3 years ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆141Aug 5, 2021Updated 4 years ago
- Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)☆615Mar 19, 2024Updated 2 years ago
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆332Aug 22, 2022Updated 3 years ago
- Classification of Lung cancer slide images using deep-learning☆530Sep 24, 2024Updated last year
- Stain normalization tools for histological analysis and computational pathology☆178Nov 13, 2025Updated 4 months ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆80Jul 29, 2025Updated 7 months ago
- Program for the analysis and visualization of whole-slide images in digital pathology☆666Sep 12, 2023Updated 2 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆319Dec 10, 2025Updated 3 months ago
- Pathologist-level interpretable whole-slide cancer diagnosis with deep learning☆131Jun 25, 2019Updated 6 years ago
- Remove pen-marking annotations on whole slide images(WSIs) for data achiving.☆18Aug 9, 2022Updated 3 years ago
- TCGA BLCA tmb prediction by Hongming Xu☆13Nov 1, 2020Updated 5 years ago
- Histopathology Image Analysis☆94Jul 6, 2023Updated 2 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆52Apr 2, 2023Updated 2 years ago
- TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification☆467May 3, 2024Updated last year
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Nov 22, 2022Updated 3 years ago
- Python scripts for automatic Whole-Slide Image preprocessing.☆36May 18, 2021Updated 4 years ago
- Powerful, open-source AI tools for digital pathology.☆353Nov 13, 2025Updated 4 months ago
- Python bindings to OpenSlide☆419Mar 13, 2026Updated last week
- Tools for tissue image stain normalisation and augmentation in Python 3☆348May 8, 2021Updated 4 years ago
- Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks☆25Sep 8, 2023Updated 2 years ago
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆143Jun 9, 2022Updated 3 years ago
- Solid Tumor Associative Modeling in Pathology☆115Mar 13, 2026Updated last week
- Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021☆162May 14, 2024Updated last year
- Full package for applying deep learning to virtual slides.☆72Sep 7, 2018Updated 7 years ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆514Updated this week