deroneriksson / python-wsi-preprocessingLinks
Python Whole Slide Image Preprocessing
☆296Updated 2 years ago
Alternatives and similar repositories for python-wsi-preprocessing
Users that are interested in python-wsi-preprocessing are comparing it to the libraries listed below
Sorting:
- ☆345Updated 3 years ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆164Updated last year
- HistoQC is an open-source quality control tool for digital pathology slides☆306Updated 2 months ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆141Updated 4 years ago
- DeepLearning - Camelyon16 dataset☆127Updated 7 years ago
- Pathologist-level interpretable whole-slide cancer diagnosis with deep learning☆132Updated 6 years ago
- predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer☆103Updated 6 years ago
- Some stain normalization code☆91Updated 3 years ago
- A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge☆208Updated 6 years ago
- Tools for tissue image stain normalisation and augmentation in Python 3☆342Updated 4 years ago
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Updated 5 years ago
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆322Updated 3 years ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆175Updated 3 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆69Updated 2 years ago
- A Python toolkit for pathology image analysis algorithms.☆451Updated 2 weeks ago
- Stain normalization tools for histological analysis and computational pathology☆155Updated 9 months ago
- H&E histopathological staining normalization☆109Updated 5 years ago
- Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma sli…☆511Updated last year
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆649Updated 2 years ago
- cGAN-based Multi Organ Nuclei Segmentation☆192Updated 3 years ago
- Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…☆168Updated 3 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆261Updated last year
- ☆67Updated 4 years ago
- Histopathology Image Analysis☆92Updated 2 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated this week
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆73Updated 9 months ago
- The solution to cameyon16 and camelyon17 challenge and also to your own WSI data project.☆319Updated 2 months ago
- Whole Slide Digital Pathology Image Tissue Localization☆45Updated 2 years ago
- Pretrained model for self supervised histopathology☆120Updated 3 years ago
- adaptive color deconvolution for paper "Zheng et al., CMPB, 2019"☆33Updated 4 years ago