Read Carl Zeiss image files (CZI).
☆48Jun 13, 2026Updated last month
Alternatives and similar repositories for czifile
Users that are interested in czifile are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python module utilizing libCZI for reading Zeiss CZI files.☆48Jul 13, 2026Updated 3 weeks ago
- native Python dataclasses for the OME data model☆68Apr 2, 2026Updated 4 months ago
- ☆18May 15, 2026Updated 2 months ago
- A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-…☆26Feb 14, 2026Updated 5 months ago
- libCZI is an Open Source Cross-Platform C++ library to read and write CZI.☆72Jul 13, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆22Aug 2, 2026Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆71Updated this week
- Python project containing Ice remoting code for OMERO☆28Jul 30, 2026Updated last week
- A napari plugin for zarr backed OME-NGFF images☆54Jul 31, 2026Updated last week
- Discover, install, and share napari plugins☆54Mar 6, 2026Updated 5 months ago
- Python library to read PicoQuant PTU files (raw TTTR data) as well as build FLIM image☆10Jul 19, 2024Updated 2 years ago
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆21Updated this week
- ☆33May 2, 2025Updated last year
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A simple and easy-to-use Python wrapper for libCZI - a cross-platform C++ library intended for providing read and write access to CZI doc…☆33Jul 6, 2026Updated last month
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- Ultra-fast spatial proteomics OME-Zarr viewer built in Rust.☆75Jun 11, 2026Updated 2 months ago
- An introduction to OME-Zarr for big bioimaging data☆27Updated this week
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆32Jul 30, 2026Updated last week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 8 months ago
- A fast and open-source scientific image processing and algorithm library.☆16Jul 31, 2026Updated last week
- Bio-Formats image file format to raw format converter☆110Aug 4, 2026Updated last week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆255Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Open Source Cross-Platform C++ library to read CZI image files☆72Sep 30, 2022Updated 3 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆57Nov 13, 2025Updated 8 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆126Aug 4, 2026Updated last week
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Updated this week
- serve Zarr datasets via HTTP☆32Jun 12, 2023Updated 3 years ago
- File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and im…☆23Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆168Updated this week
- Full Docs @ https://skalalab.github.io/flim_playground_doc/☆16Aug 4, 2026Updated last week
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Results of the experiments performed for the paper "Open-Set Support Vector Machines".☆11Jul 6, 2023Updated 3 years ago
- Easily read and write ome-tiff images in python☆28May 6, 2024Updated 2 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Aug 10, 2023Updated 3 years ago
- Yet Another Ome-ZARR Schema❗️☆23Jul 1, 2026Updated last month
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated 2 years ago
- Process images using SimpleITK in napari☆23May 1, 2025Updated last year
- Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.☆23Updated this week