Read Carl Zeiss image files (CZI).
☆39Apr 30, 2026Updated 3 weeks ago
Alternatives and similar repositories for czifile
Users that are interested in czifile are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python module utilizing libCZI for reading Zeiss CZI files.☆48Mar 31, 2026Updated last month
- native Python dataclasses for the OME data model☆65Apr 2, 2026Updated last month
- Python library to read PicoQuant PTU files (raw TTTR data) as well as build FLIM image☆10Jul 19, 2024Updated last year
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆21May 10, 2026Updated last week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and im…☆23Mar 17, 2026Updated 2 months ago
- Results of the experiments performed for the paper "Open-Set Support Vector Machines".☆11Jul 6, 2023Updated 2 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Aug 10, 2023Updated 2 years ago
- Discover, install, and share napari plugins☆54Mar 6, 2026Updated 2 months ago
- ☆33May 2, 2025Updated last year
- Process images using SimpleITK in napari☆23May 1, 2025Updated last year
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated 2 years ago
- A napari plugin for zarr backed OME-NGFF images☆50May 11, 2026Updated last week
- A simple and easy-to-use Python wrapper for libCZI - a cross-platform C++ library intended for providing read and write access to CZI doc…☆28Mar 16, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python project containing Ice remoting code for OMERO☆28Apr 22, 2026Updated 3 weeks ago
- Open Source Cross-Platform C++ library to read CZI image files☆72Sep 30, 2022Updated 3 years ago
- Fast, modular and reproducible generation of publication quality scientific figures and movies with only a few lines of code.☆17Apr 9, 2025Updated last year
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Aug 6, 2025Updated 9 months ago
- A python script editor plugin for napari☆11Jul 8, 2023Updated 2 years ago
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆56May 20, 2024Updated 2 years ago
- ☆12Mar 24, 2023Updated 3 years ago
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.☆22Mar 10, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Demo Code for PicoQuants Time Tagged File Formats☆33Oct 15, 2025Updated 7 months ago
- snAPI is a Python wrapper which enables seamless communication and configuration with PicoQuant TCSPC devices.☆35Apr 24, 2026Updated 3 weeks ago
- Workshop materials for "Images to Knowledge with ImageJ and Friends" 2020 conference☆13Apr 26, 2022Updated 4 years ago
- libCZI is an Open Source Cross-Platform C++ library to read and write CZI.☆67May 11, 2026Updated last week
- Command line tool to plot genomic coverage from a BAM file☆14Apr 5, 2023Updated 3 years ago
- Large image tiling and stitching library for scaling Python functions to arbitrary input image sizes.☆13Nov 17, 2025Updated 6 months ago
- Ladybird Pattern Formation (LPF)☆14Apr 8, 2026Updated last month
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆165Apr 6, 2026Updated last month
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Apr 4, 2025Updated last year
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆49Nov 14, 2024Updated last year
- Read and write ImageJ ROI format.☆89Feb 11, 2026Updated 3 months ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Simple pure Python SAM parser and objects for working with SAM records☆64Mar 20, 2026Updated 2 months ago
- A napari plugin for itk-elastix☆42Feb 16, 2026Updated 3 months ago