cgohlke / czifileView external linksLinks
Read Carl Zeiss image files (CZI).
☆34Feb 19, 2025Updated 11 months ago
Alternatives and similar repositories for czifile
Users that are interested in czifile are comparing it to the libraries listed below
Sorting:
- native Python dataclasses for the OME data model☆65Updated this week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 2 months ago
- A simple and easy-to-use Python wrapper for libCZI - a cross-platform C++ library intended for providing read and write access to CZI doc…☆27Dec 15, 2025Updated 2 months ago
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated last year
- Open Source Cross-Platform C++ library to read CZI image files☆72Sep 30, 2022Updated 3 years ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Aug 6, 2025Updated 6 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Aug 10, 2023Updated 2 years ago
- Process images using SimpleITK in napari☆23May 1, 2025Updated 9 months ago
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆54May 20, 2024Updated last year
- File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and im…☆23Dec 12, 2025Updated 2 months ago
- Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.☆22Jul 23, 2025Updated 6 months ago
- Discover, install, and share napari plugins☆54Updated this week
- libCZI is an Open Source Cross-Platform C++ library to read and write CZI.☆63Jan 30, 2026Updated 2 weeks ago
- snAPI is a Python wrapper which enables seamless communication and configuration with PicoQuant TCSPC devices.☆33Nov 17, 2025Updated 2 months ago
- Demo Code for PicoQuants Time Tagged File Formats☆31Oct 15, 2025Updated 4 months ago
- Easily read and write ome-tiff images in python☆28May 6, 2024Updated last year
- ☆33May 2, 2025Updated 9 months ago
- Process Simulations Meet AI. Supercharge Your Process Engineering. Generate Infinite Data, Train Advanced Models, and Revolutionise Indus…☆11Oct 8, 2024Updated last year
- A napari plugin for zarr backed OME-NGFF images☆43Jan 19, 2026Updated 3 weeks ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- Read and write ImageJ ROI format.☆84Updated this week
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆160Feb 9, 2026Updated last week
- Leica Image Format (LIF) file reader for Python☆38Jul 7, 2025Updated 7 months ago
- An extensible component for detecting cosmetic contact lenses in iris imagery.☆10Jun 25, 2025Updated 7 months ago
- This is the repository for the 2021 uq-bio Summer School☆12May 9, 2022Updated 3 years ago
- Tool for segmentation in bioimaging☆35Updated this week
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Apr 4, 2025Updated 10 months ago
- A napari plugin for clustering objects according to their properties.☆90Feb 9, 2026Updated last week
- Monte-Carlo simulation of an FD-OCT B-Scan.☆12Nov 17, 2021Updated 4 years ago
- ☆13Sep 22, 2017Updated 8 years ago
- GUI for segmenting the lumen of intravascular OCT pullbacks☆14Jul 29, 2020Updated 5 years ago
- PhD Thesis Template with Roboto Font and Color Sections☆11Jul 24, 2020Updated 5 years ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆13Updated this week
- Code for paper ''Weakly Supervised Estimation of Shadow Confidence Maps in Fetal Ultrasound Imaging''☆12Nov 8, 2020Updated 5 years ago
- ☆12Sep 24, 2018Updated 7 years ago
- Novel algorithms to predict Remaining Useful Life (RUL) on NASA’s benchmark dataset, CMAPSS turbofan engine degradation simulation.☆11Nov 8, 2023Updated 2 years ago
- This project basically involves Human Resource Analysis and Employee Attrition Prediction using various data visualisation techniques & m…☆10May 13, 2020Updated 5 years ago
- This repository implements the Fast Iterative Method (FIM) for use in python☆12Apr 15, 2024Updated last year
- Repository to share scripts and functions for Nonlinear Beamforming for Ultrasound Flow Imaging.☆11Jun 25, 2022Updated 3 years ago