cgohlke / czifile
Read Carl Zeiss image files (CZI).
☆30Updated 2 months ago
Alternatives and similar repositories for czifile
Users that are interested in czifile are comparing it to the libraries listed below
Sorting:
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated last week
- native Python dataclasses for the OME data model☆56Updated last week
- ☆71Updated last month
- Command-line client for Fractal☆45Updated last week
- Multiple file format reading directly into napari using pure Python☆36Updated 9 months ago
- StarDist plugin for napari☆38Updated 8 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆71Updated this week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- ☆49Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆37Updated last week
- A napari plugin for zarr backed OME-NGFF images☆33Updated last week
- Track and lineage visualization with btrack and Napari☆45Updated 6 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆35Updated this week
- Browse your OMERO database from within napari.☆37Updated this week
- Python module for registering and fusing multi-view microscopy data☆23Updated 2 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated last week
- Python module utilizing libCZI for reading Zeiss CZI files.☆37Updated last month
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 6 months ago
- ☆23Updated last week
- A napari plugin for clustering objects according to their properties.☆84Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated 2 months ago
- ☆41Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆31Updated last month
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 2 months ago
- Lectures for a napari training course☆50Updated last year
- Running compute-intense parts of BigStitcher distributed☆26Updated last month
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 5 months ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 4 months ago
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆63Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆64Updated last week