Alternatives and similar repositories for iDynoMiCS

Users that are interested in iDynoMiCS are comparing it to the libraries listed below

• cellmodeller / CellModeller
  GPU-accelerated multicellular modelling framework
  ☆63Updated 2 months ago
• nufeb / NUFEB
  Official release of the NUFEB software
  ☆21Updated 2 years ago
• MathCancer / PhysiCell
  PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch.…
  ☆165Updated 5 months ago
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆182Updated 4 months ago
• CompuCell3D / CompuCell3D
  CompuCell3D public source code repository
  ☆69Updated this week
• alexxijielu / yeast_segmentation
  User friendly mask-rcnn segmentation for images of yeast cells
  ☆30Updated last year
• HenriquesLab / NanoJ-Fluidics
  Manual, source-code and binaries for the NanoJ-Fluidics project
  ☆50Updated 2 years ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆119Updated last week
• ingewortel / celltrackR
  An R package for the analysis and interpretation of cell migration tracks.
  ☆13Updated 10 months ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆69Updated 7 months ago
• Chaste / Chaste
  Chaste - Cancer Heart And Soft Tissue Environment - main public repository.
  ☆138Updated last week
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆112Updated this week
• mfitzp / theolb
  The Open Lab Book: A collection of freely distributable scientific protocols
  ☆28Updated 5 years ago
• mwdavis2 / ApE
  ApE- A plasmid Editor
  ☆11Updated 3 years ago
• VoigtLab / dnaplotlib
  DNA plotting library for Python
  ☆297Updated last year
• opencobra / cobratoolbox
  The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
  ☆263Updated last week
• cytoflow / cytoflow
  A Python toolbox for quantitative, reproducible flow cytometry analysis
  ☆198Updated this week
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 5 years ago
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆181Updated 2 weeks ago
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆257Updated 2 months ago
• nedelec / cytosim-2017
  This is an older version of cytosim, a cytoskeleton simulation engine
  ☆27Updated 3 years ago
• qgeissmann / OpenCFU
  An easy-to-use C++ application to count bacterial colonies (i.e. CFU).
  ☆85Updated 2 years ago
• igemsoftware2019 / iGemMarburg2019
  iGem Marburg 2019
  ☆19Updated 5 years ago
• tissue-forge / tissue-forge
  Interactive, particle-based physics, chemistry and biology modeling and simulation environment
  ☆23Updated this week
• abelew / ApE
  A Plasmid Editor
  ☆15Updated 2 years ago
• trackmate-sc / TrackMate
  TrackMate is your buddy for your everyday tracking.
  ☆199Updated this week
• zakandrewking / escher
  Build, share, and embed visualizations of metabolic pathways.
  ☆224Updated 11 months ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆117Updated 2 years ago
• FPvisualization / fpvisualization.github.io
  Visualization of fluorescent protein properties with d3.js. Obsolete.
  ☆12Updated last year
• virtualcell / vcell
  Virtual Cell Framework
  ☆88Updated this week