Fast spatial deconvolution via leverage-score sketching — scales to million-spot datasets while preserving rare cell type signals.
☆24Jun 30, 2026Updated last month
Alternatives and similar repositories for flashdeconv
Users that are interested in flashdeconv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MCP server for spatial transcriptomics analysis through natural language interfaces.☆43Updated this week
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 4 years ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Aug 3, 2026Updated last week
- EnrichMap: Spatially-informed enrichment analysis for functional interpretation of spatial transcriptomics.☆17Jun 26, 2026Updated last month
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆21May 28, 2026Updated 2 months ago
- Automatic annotation of single-cell RNA-seq data from the literature☆48Jul 20, 2025Updated last year
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆16Mar 23, 2024Updated 2 years ago
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 10 months ago
- A unified framework for identifying multicellular niches and niche-regulated cell states from spatial transcriptomics data.☆17Aug 3, 2026Updated last week
- Easy single cell analysis platform for enrichment☆228Updated this week
- ComBat-ref is a Simple and Highly Effective Batch Effect Correction Method for RNA-seq Count Data☆17Updated this week
- Sketch phylogenetic trees and networks☆26Aug 3, 2026Updated last week
- ☆30Jun 25, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆21May 6, 2025Updated last year
- Charting spatial ligand-target activity using Renoir (ligand-taRgEt iNteractions acrOss spatIal topogRaphy)☆21Jun 26, 2026Updated last month
- ☆25Jun 14, 2025Updated last year
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Nov 4, 2023Updated 2 years ago
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆16Jul 15, 2026Updated 3 weeks ago
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 8 months ago
- ☆21Nov 12, 2025Updated 8 months ago
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆29Jul 27, 2026Updated 2 weeks ago
- Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count …☆90Jun 17, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GAM workshop for NHS-R Community Conference 2023☆13Aug 8, 2025Updated last year
- MCP server for single cell analysis☆12May 15, 2025Updated last year
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆55Jan 21, 2026Updated 6 months ago
- Robust and scalable single-cell signature scoring☆28Jul 28, 2026Updated 2 weeks ago
- 𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of …☆73Jul 5, 2026Updated last month
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 11 months ago
- scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled cluster…☆38Mar 30, 2026Updated 4 months ago
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆28Updated this week
- Codes used in LISTA project.☆15Apr 17, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- A lightweight, ultrafast and general embedding framework for large-scale spatial omics data☆31May 28, 2026Updated 2 months ago
- Python package for deep learning based image to image transformation☆53May 1, 2026Updated 3 months ago
- Docker images for Chaste☆13Jul 21, 2026Updated 2 weeks ago
- xSPDE is an extensible toolbox for solving Stochastic Partial Differential Equations.☆12Mar 9, 2025Updated last year
- ☆100Jul 29, 2026Updated last week
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago