ComBat-ref is a Simple and Highly Effective Batch Effect Correction Method for RNA-seq Count Data
☆17Apr 12, 2026Updated 3 months ago
Alternatives and similar repositories for Combat-ref
Users that are interested in Combat-ref are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image☆18Jan 16, 2023Updated 3 years ago
- TOAST: Spatially Aware Optimal Transport for Alignment of Spatial Omics Data☆15Apr 9, 2026Updated 3 months ago
- ☆23Apr 1, 2026Updated 3 months ago
- An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.☆14Nov 12, 2025Updated 8 months ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆13Mar 13, 2022Updated 4 years ago
- Highly accurate prediction of single-cell spatial transcriptomics from histology images☆24May 31, 2026Updated last month
- ☆24Apr 17, 2026Updated 3 months ago
- Large language models as universal biomedical simulators☆20Jul 17, 2024Updated 2 years ago
- Statistical power studies for multi-omics experiments.☆34Jan 18, 2025Updated last year
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆11Dec 12, 2022Updated 3 years ago
- ✂️ Pooled CRISPR screen optimization tool☆20Jan 5, 2024Updated 2 years ago
- Fast spatial deconvolution via leverage-score sketching — scales to million-spot datasets while preserving rare cell type signals.☆22Jun 30, 2026Updated 3 weeks ago
- Automatically annotate cell types, consistently across samples.☆25Jul 13, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Download and cache HuggingFace Hub files☆20Apr 15, 2026Updated 3 months ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆21Aug 13, 2025Updated 11 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆35Apr 9, 2026Updated 3 months ago
- kmdata: A Database of Reconstructed Individual Patient Level Data from 153 Oncology Clinical Trials☆15May 27, 2025Updated last year
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 8 months ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- Module 4 for HKU Single-cell Workshop☆12Jul 6, 2021Updated 5 years ago
- ☆16Mar 18, 2025Updated last year
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆26Apr 22, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆21May 14, 2026Updated 2 months ago
- A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data☆41Jun 26, 2026Updated 3 weeks ago
- ☆11Jul 8, 2024Updated 2 years ago
- ☆10Jun 21, 2025Updated last year
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Apr 16, 2026Updated 3 months ago
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆29Dec 7, 2024Updated last year
- ☆90Jun 29, 2024Updated 2 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆44Jul 10, 2026Updated last week
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆32Oct 6, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- BulkFormer: A large-scale foundation model for human bulk transcriptomes☆68Jul 3, 2026Updated 2 weeks ago
- BISulfite-seq CUI Toolkit☆70Updated this week
- UNet script, model, sample data☆14Feb 19, 2025Updated last year
- Unified access to several second-generation deconvolution methods☆105Jul 6, 2026Updated 2 weeks ago
- scRNA analysis of public dataset on bladder cancer☆20Dec 12, 2025Updated 7 months ago
- ☆20Apr 24, 2026Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆112May 27, 2025Updated last year