ComBat-ref is a Simple and Highly Effective Batch Effect Correction Method for RNA-seq Count Data
☆17Aug 4, 2026Updated last month
Alternatives and similar repositories for Combat-ref
Users that are interested in Combat-ref are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image☆18Jan 16, 2023Updated 3 years ago
- TOAST: Spatially Aware Optimal Transport for Alignment of Spatial Omics Data☆17Apr 9, 2026Updated 5 months ago
- ☆21Sep 11, 2026Updated last week
- An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.☆13Nov 12, 2025Updated 10 months ago
- ☆24Aug 26, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- End-guided RNA assembler☆15Dec 2, 2025Updated 9 months ago
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆13Mar 13, 2022Updated 4 years ago
- ☆25Sep 11, 2026Updated last week
- Highly accurate prediction of single-cell spatial transcriptomics from histology images☆28Updated this week
- R-package to interface with the PlantNet API☆12Mar 9, 2022Updated 4 years ago
- Statistical power studies for multi-omics experiments.☆35Jan 18, 2025Updated last year
- ✂️ Pooled CRISPR screen optimization tool☆20Jan 5, 2024Updated 2 years ago
- Fast spatial deconvolution via leverage-score sketching — scales to million-spot datasets while preserving rare cell type signals.☆26Sep 9, 2026Updated last week
- ☆10Feb 22, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Automatically annotate cell types, consistently across samples.☆28Updated this week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆36Aug 28, 2026Updated 3 weeks ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆21Aug 13, 2025Updated last year
- Multi-Omics Peptide Generator☆31Nov 6, 2025Updated 10 months ago
- kmdata: A Database of Reconstructed Individual Patient Level Data from 153 Oncology Clinical Trials☆15May 27, 2025Updated last year
- WWW2021: Interpreting and Unifying Graph Neural Networks with An Optimization Framework☆14Jun 23, 2021Updated 5 years ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- Code used for muti cellular factor analysis☆20Dec 13, 2023Updated 2 years ago
- Module 4 for HKU Single-cell Workshop☆12Jul 6, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Large language models as universal biomedical simulators☆20Jul 17, 2024Updated 2 years ago
- ☆16Mar 18, 2025Updated last year
- "HomoGCL: Rethinking Homophily in Graph Contrastive Learning" in KDD'23☆14Jul 6, 2023Updated 3 years ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆26Apr 22, 2026Updated 4 months ago
- Code for paper: Overlapping Community Detection via Nonnegative Matrix Factorization☆11Apr 16, 2014Updated 12 years ago
- ☆21May 14, 2026Updated 4 months ago
- ☆11Jul 8, 2024Updated 2 years ago
- A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data☆46Sep 11, 2026Updated last week
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆29Jul 27, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆10Jun 21, 2025Updated last year
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Aug 31, 2026Updated 2 weeks ago
- ☆90Jun 29, 2024Updated 2 years ago
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆32Oct 6, 2025Updated 11 months ago
- BISulfite-seq CUI Toolkit☆70Jul 18, 2026Updated 2 months ago
- UNet script, model, sample data☆14Feb 19, 2025Updated last year
- Unified access to several second-generation deconvolution methods☆111Aug 3, 2026Updated last month