ComBat-ref is a Simple and Highly Effective Batch Effect Correction Method for RNA-seq Count Data
☆17Aug 4, 2026Updated 2 months ago
Alternatives and similar repositories for Combat-ref
Users that are interested in Combat-ref are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code used for muti cellular factor analysis☆20Dec 13, 2023Updated 2 years ago
- Highly accurate prediction of single-cell spatial transcriptomics from histology images☆37Oct 18, 2026Updated last week
- TOAST: Spatially Aware Optimal Transport for Alignment of Spatial Omics Data☆17Apr 9, 2026Updated 6 months ago
- Pan-Cancer Single Cell Classifier☆86May 30, 2024Updated 2 years ago
- ☆21Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image☆20Jan 16, 2023Updated 3 years ago
- A command-line tool to capture hierarchical relationships at scale☆20Updated this week
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆14Mar 13, 2022Updated 4 years ago
- ☆24Aug 26, 2026Updated 2 months ago
- RIPPLE - Spatial transcriptomics analysis of a cell's influence on its neighbors' transcriptome☆41Sep 14, 2026Updated last month
- End-guided RNA assembler☆15Dec 2, 2025Updated 10 months ago
- ConsensusTME Gene Sets and R Script☆44Jun 6, 2024Updated 2 years ago
- An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.☆13Nov 12, 2025Updated 11 months ago
- ☆16Aug 11, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- BamQuery provides RNA-seq quantification for a given peptide (from 8 to 11 residues) in chosen RNA-seq samples (single or bulk).☆13Aug 12, 2024Updated 2 years ago
- Statistical power studies for multi-omics experiments.☆35Jan 18, 2025Updated last year
- ☆25Sep 28, 2026Updated last month
- ☆11Dec 15, 2022Updated 3 years ago
- GFMBench-API offers a unified middleware that decouples genomic foundation model architectures from diverse tasks, standardizes data stre…☆16Oct 15, 2026Updated 2 weeks ago
- Provide programmatic access to the tonsil cell atlas datasets☆10Oct 22, 2026Updated last week
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- Repository for Immune Atlas Research Consortium at MMRF for storing research project code☆13Oct 3, 2025Updated last year
- The macrophage-atlas repository contains code for constructing and visualizing a pan-cancer macrophage atlas to investigate tumor-associa…☆13May 20, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics☆26Sep 29, 2026Updated last month
- kmdata: A Database of Reconstructed Individual Patient Level Data from 153 Oncology Clinical Trials☆15May 27, 2025Updated last year
- ☆12Oct 13, 2023Updated 3 years ago
- ☆10Feb 22, 2023Updated 3 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆36Aug 28, 2026Updated 2 months ago
- An official PyTorch implementation of "Certifiably Robust Graph Contrastive Learning" (NeurIPS 2023)☆11Jan 22, 2024Updated 2 years ago
- Multi-Omics Peptide Generator☆33Nov 6, 2025Updated 11 months ago
- Automatically annotate cell types, consistently across samples.☆30Updated this week
- Module 4 for HKU Single-cell Workshop☆12Jul 6, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R-package to interface with the PlantNet API☆12Mar 9, 2022Updated 4 years ago
- ✂️ Pooled CRISPR screen optimization tool☆20Jan 5, 2024Updated 2 years ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆26Apr 22, 2026Updated 6 months ago
- ☆16Mar 18, 2025Updated last year
- Public landing page and releases for CellTune.☆12Jul 13, 2026Updated 3 months ago
- 🌊 DuckLake website and specification☆21Updated this week
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆22Aug 13, 2025Updated last year