MCP server for spatial transcriptomics analysis through natural language interfaces.
☆44Aug 15, 2026Updated last month
Alternatives and similar repositories for ChatSpatial
Users that are interested in ChatSpatial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast spatial deconvolution via leverage-score sketching — scales to million-spot datasets while preserving rare cell type signals.☆26Sep 9, 2026Updated last week
- List of Spatial Transcriptomics related Tools organized per category☆200Sep 9, 2026Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 10 months ago
- MCP server for single cell analysis☆12May 15, 2025Updated last year
- This is a repository of IAMSAM, an image-based ST analysis tool☆22Jun 24, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A comprehensive AI & ML project portfolio from the University of Texas at Austin PG Program, demonstrating real-world data science and ma…☆18Jan 25, 2026Updated 7 months ago
- A harness for spatial biology☆211May 4, 2026Updated 4 months ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆19Aug 20, 2026Updated last month
- ☆31Sep 4, 2026Updated 2 weeks ago
- Analyzing cellular niches in spatial transcriptomics data☆38Nov 18, 2024Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆106Dec 11, 2023Updated 2 years ago
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆27May 23, 2026Updated 3 months ago
- ☆38Updated this week
- STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data☆63May 22, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆293Updated this week
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆194Aug 31, 2026Updated 2 weeks ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆95Jul 4, 2026Updated 2 months ago
- ☆32Jan 7, 2026Updated 8 months ago
- Unbiased single-cell transcriptomic data cell type identification☆15Updated this week
- Nextflow implementation of scAutoQC pipeline☆12Jul 9, 2026Updated 2 months ago
- A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data☆20Jan 16, 2026Updated 8 months ago
- From geospatial to spatial -omics☆103Jul 24, 2026Updated last month
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆184Jan 8, 2026Updated 8 months ago
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- Extension of SpatialExperiment with sf☆58May 6, 2026Updated 4 months ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆99Apr 30, 2026Updated 4 months ago
- Accessible and interoperable whole slide image analysis☆324Aug 30, 2026Updated 3 weeks ago
- renders a KEGGML file and displays a KEGG pathway☆11Jul 14, 2016Updated 10 years ago
- An R package for performing cell typing in SMI and other single cell data☆55May 1, 2026Updated 4 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆158Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Robust and scalable single-cell signature scoring☆29Sep 1, 2026Updated 2 weeks ago
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 3 months ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- ☆22Updated this week
- A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data☆46Sep 11, 2026Updated last week
- GPU-accelerated RCTD for spatial transcriptomics☆57Sep 10, 2026Updated last week
- Bioinformatic MCP server that wraps the most useful functions of the gget library☆31Oct 27, 2025Updated 10 months ago