GenPipes Read the Docs repository
☆23Apr 30, 2026Updated 4 months ago
Alternatives and similar repositories for GenPipes_Docs
Users that are interested in GenPipes_Docs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated 11 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Sep 20, 2017Updated 8 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆19Sep 12, 2021Updated 4 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- I have a cunning plan!☆14Jun 3, 2026Updated 3 months ago
- Integrative virome pipeline☆14Nov 4, 2024Updated last year
- ☆12Oct 3, 2023Updated 2 years ago
- RNA-seq, QC and differential analysis pipeline☆17Aug 27, 2026Updated last week
- An Introductory Undergraduate course in Bioinformatics☆47Mar 2, 2021Updated 5 years ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 8 years ago
- A simple Star Wars CLI tool built with picocli☆12Jun 2, 2025Updated last year
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆23Sep 7, 2019Updated 7 years ago
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- DDI-LLM:💊 Drug-Drug Interaction Prediction: Experimenting With Large Language-Based Drug Information Embedding For Multi-View Representa…☆14Sep 15, 2023Updated 2 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Dec 24, 2025Updated 8 months ago
- Identify Variants of Concern from metagenomic samples of SARS-CoV-2☆13Sep 9, 2021Updated 4 years ago
- ☆18Mar 17, 2022Updated 4 years ago
- Script for parsing SAM/BAM files for coverage statistics☆16Jun 13, 2023Updated 3 years ago
- Material for a workshop on Bayesian analysis of capture-recapture data with hidden Markov models and Nimble☆15Apr 30, 2025Updated last year
- ☆16May 1, 2025Updated last year
- Fast gradient-based optimization of resistance surfaces☆17Jul 9, 2020Updated 6 years ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15May 14, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A public repository of scientific and media resources of SARS-CoV-2 related COVID-19☆17Dec 18, 2021Updated 4 years ago
- ☆12Mar 16, 2025Updated last year
- Repository to ZIP Plink2 LD files and have random access☆17Aug 12, 2026Updated 3 weeks ago
- Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical bi…☆19Sep 1, 2023Updated 3 years ago
- A metadata commons to store research software metadata☆48Updated this week
- A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscr…☆15Apr 12, 2026Updated 4 months ago
- Description Materials for Spring 2020 Applied Genomics Course☆16Apr 22, 2020Updated 6 years ago
- R interface to morpheus.js heatmap widget☆40Oct 22, 2020Updated 5 years ago
- Main development repository for SpreadGL☆24Jun 18, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Beta-VAE, Conditional-VAE, Total Correlation-VAE, FactorVAE, Relevance Factor-VAE, Multi-Level VAE, (Soft)-IntroVAE (Beta-Version), LVAE,…☆17Aug 19, 2025Updated last year
- ☆27Dec 9, 2022Updated 3 years ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Jul 3, 2026Updated 2 months ago
- PRS pipeline using PRS_CS☆15May 19, 2026Updated 3 months ago
- Code and simulations using biologically annotated neural networks☆23Aug 23, 2021Updated 5 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- A Collection of Platform, Tools, and Resources for Antibody Engineering☆22Aug 5, 2026Updated last month