c3g / GenPipes_DocsLinks
GenPipes Read the Docs repository
☆22Updated last week
Alternatives and similar repositories for GenPipes_Docs
Users that are interested in GenPipes_Docs are comparing it to the libraries listed below
Sorting:
- List of computational resources for analyzing microbial sequencing data.☆67Updated 4 months ago
- Sphinx documentation source for a computational genomics tutorial.☆34Updated 4 years ago
- Long read production pipelines☆150Updated last week
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆12Updated 5 years ago
- Sequana: a set of Snakemake NGS pipelines☆148Updated 3 weeks ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆75Updated last month
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- Utilities for building and managing bioconda recipes☆103Updated this week
- ☆75Updated 4 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆38Updated last week
- Workflow management with Nextflow and nf-core☆26Updated 9 months ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- ☆63Updated 9 years ago
- Config files used to define parameters specific to compute environments at different Institutions☆104Updated last week
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆26Updated 5 months ago
- NanoDJ: A Dockerized Jupyter Notebook for Interactive Oxford Nanopore MinION Sequence Manipulation and Genome Assembly☆50Updated 5 years ago
- Workshop materials for shotgun metagenomics☆36Updated 8 years ago
- ☆53Updated 3 months ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Updated 5 years ago
- is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and report…☆82Updated last month
- Master of Pores 2☆23Updated 11 months ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆63Updated 2 years ago
- A collection of modules and sub-workflows for Nextflow☆28Updated last week
- An R Package for Multiplex PCR Primer Design and Analysis☆28Updated 3 months ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 5 years ago
- Portable WDL workflows for CZ ID production pipelines☆47Updated 4 months ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆22Updated 6 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated this week