Alternatives and similar repositories for A-Review-of-pLMs-and-Methods-for-Protein-Structure-Prediction

Users that are interested in A-Review-of-pLMs-and-Methods-for-Protein-Structure-Prediction are comparing it to the libraries listed below

• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆119Updated 7 months ago
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆94Updated 8 months ago
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆96Updated 2 years ago
• elttaes / Revisiting-PLMs
  Exploring Evolution-aware & free protein language models as protein function predictors
  ☆63Updated last year
• DeepGraphLearning / PEER_Benchmark
  PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
  ☆95Updated 2 years ago
• KyGao / ABGNN
  PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"
  ☆53Updated last year
• blt2114 / ProtDiff_SMCDiff
  Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…
  ☆74Updated 2 years ago
• zhengkangjie / ESM-AA
  ☆76Updated 7 months ago
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆59Updated last year
• dqwang122 / EATLM
  Code for 'On Pre-trained Language Models For Antibody'
  ☆32Updated 2 years ago
• divnori / rnaflow
  RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
  ☆69Updated last year
• BytedProtein / ByProt
  ☆204Updated last year
• wengong-jin / RefineGNN
  ☆130Updated 3 years ago
• wengong-jin / abdockgen
  ☆107Updated 2 years ago
• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆84Updated 4 months ago
• QizhiPei / FABind
  FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)
  ☆133Updated 2 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆165Updated last year
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆36Updated 11 months ago
• KyGao / awesome-docking
  An awesome & curated list of docking papers
  ☆115Updated 7 months ago
• TianZhuAI4S / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆37Updated last year
• Ced3-han / PepFlowww
  Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)
  ☆91Updated 4 months ago
• rmrao / msa-transformer
  MSA Transformer reproduction code
  ☆85Updated 3 years ago
• pengzhangzhi / protein-sequence-diffusion-model
  diffusion model for protein sequence generation
  ☆50Updated 2 years ago
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆64Updated 4 months ago
• bytedance / HMR
  Learning Harmonic Molecular Representations on Riemannian Manifold, ICLR, 2023
  ☆23Updated 2 years ago
• HeliXonProtein / binding-ddg-predictor
  open source repository
  ☆141Updated last year
• THUNLP-MT / PepGLAD
  Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)
  ☆94Updated 5 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆94Updated 10 months ago
• DeepGraphLearning / ProtST
  [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts
  ☆98Updated last year
• instadeepai / protein-structure-tokenizer
  Official implementation of "Learning the language of protein structures"
  ☆39Updated 3 months ago