bozhenhhu / A-Review-of-pLMs-and-Methods-for-Protein-Structure-PredictionLinks
☆42Updated 2 years ago
Alternatives and similar repositories for A-Review-of-pLMs-and-Methods-for-Protein-Structure-Prediction
Users that are interested in A-Review-of-pLMs-and-Methods-for-Protein-Structure-Prediction are comparing it to the libraries listed below
Sorting:
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆94Updated 10 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆121Updated 8 months ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆99Updated 2 years ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆98Updated 2 years ago
- ☆130Updated 3 years ago
- ☆205Updated last year
- The first large protein language model trained follows structure instructions.☆87Updated 6 months ago
- ☆107Updated 2 years ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆73Updated 2 years ago
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆53Updated 2 years ago
- An awesome & curated list of docking papers☆118Updated 8 months ago
- ☆76Updated 9 months ago
- FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)☆134Updated 4 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆59Updated last year
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆76Updated last year
- Generative Language Modeling for Antibody Design☆172Updated last year
- Code for 'On Pre-trained Language Models For Antibody'☆32Updated 2 years ago
- open source repository☆143Updated last year
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆177Updated 2 years ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆88Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 5 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆108Updated last year
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆99Updated 2 years ago
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆180Updated 2 years ago
- Official repository of ReactZyme☆36Updated last year
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆95Updated 7 months ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆94Updated 5 months ago
- diffusion model for protein sequence generation☆50Updated 2 years ago
- MSA Transformer reproduction code☆86Updated 4 years ago