Alternatives and similar repositories for DL-Course-2023

Users that are interested in DL-Course-2023 are comparing it to the libraries listed below

• zangzelin / code_Must
  ☆31Updated last year
• Lupin1998 / VQDNA
  [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling
  ☆10Updated last year
• zangzelin / code_dmtme
  ☆26Updated 3 months ago
• aim-uofa / BA-DDG
  [ICLR 2025 Spotlight] Boltzmann-Aligned Inverse Folding Model as a Predictor of Mutational Effects on Protein-Protein Interactions
  ☆41Updated 7 months ago
• PKU-YuanGroup / TaxDiff
  The official code for "TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation"
  ☆72Updated last year
• manuelmlmadeira / DeFoG
  Official implementation of the paper: "DeFoG: Discrete Flow Matching for Graph Generation"
  ☆40Updated 2 weeks ago
• xiaoxiaokuye / ICML_2024_ai4sci_paper
  ☆10Updated last year
• ljh0v0 / D3PM-Pytorch
  Unofficial PyTorch implementation of Discrete Denoising Diffusion Probabilistic Model(D3PM)
  ☆40Updated 2 years ago
• PKU-YuanGroup / ProLLaMA
  A Protein Large Language Model for Multi-Task Protein Language Processing
  ☆200Updated last month
• ChenyuWang-Monica / DRAKES
  Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"
  ☆62Updated 5 months ago
• qym7 / SparseDiff
  Official implementation for 'Sparse denoising diffusion for large graph generation'
  ☆69Updated 2 months ago
• LINs-lab / Research_Methodology_of_Computer_Science_and_Technology
  Graduate Course at Westlake University
  ☆56Updated 3 weeks ago
• GLAD-RUC / GGNN4Science
  ☆135Updated 4 months ago
• terry-r123 / RNABenchmark
  [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
  ☆53Updated last year
• dptech-corp / Uni-3DAR
  Implementation of paper "Uni-3DAR: Unified 3D Generation and Understanding via Autoregression on Compressed Spatial Tokens"
  ☆134Updated 6 months ago
• A4Bio / RDesign
  The official implementation of the ICLR'24 paper RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-base…
  ☆51Updated last year
• RingBDStack / HypDiff
  This repository is the official implementation of "Hyperbolic Geometric Latent Diffusion Model for Graph Generation (HypDiff)" accepted b…
  ☆31Updated last year
• zhouc20 / LatentGraphDiffusion
  Official Repository for NeurIPS 2024 Paper Unifying Generation and Prediction on Graphs with Latent Graph Diffusion
  ☆37Updated 10 months ago
• LingxiaoShawn / USD3
  Unify and Simplify Discrete-time and Continuous-time Discrete Denoising Diffusion
  ☆23Updated 9 months ago
• ML-GSAI / BFN-Solver
  Official PyTorch implementation for "Unifying Bayesian Flow Networks and Diffusion Models through Stochastic Differential Equations"
  ☆41Updated last year
• KrzakalaPaul / Any2Graph
  ☆12Updated 7 months ago
• HowardLi1984 / ECDFormer
  【Nature Computational Science 2025🔥】Deep peak property learning for efficient chiral molecules ECD spectra prediction
  ☆45Updated 9 months ago
• aim-uofa / VFN
  [ICLR 2024 Spotlight] The official repo for the paper "De novo Protein Design using Geometric Vector Field Networks".
  ☆30Updated last year
• bytedance / dplm
  The Family of Diffusion Protein Language Models (DPLM)
  ☆279Updated 3 months ago
• A4Bio / PiFold
  The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.
  ☆180Updated 2 years ago
• ZhuJiwei111 / SPACE
  ☆18Updated 3 months ago
• jzhoulab / ddsm
  Dirichlet Diffusion Score Model for Biological Sequence Generation.
  ☆62Updated 8 months ago
• kuleshov-group / discrete-diffusion-guidance
  Simple Guidance Mechanisms for Discrete Diffusion Models
  ☆57Updated 10 months ago
• UNITES-Lab / CryoNeRF
  ☆17Updated 6 months ago
• MinkaiXu / GeoLDM
  Geometric Latent Diffusion Models for 3D Molecule Generation
  ☆259Updated 2 years ago