Alternatives and similar repositories for DL-Course-2023

Users that are interested in DL-Course-2023 are comparing it to the libraries listed below

• manuelmlmadeira / DeFoG
  Official implementation of the paper: "DeFoG: Discrete Flow Matching for Graph Generation"
  ☆44Updated last month
• Lupin1998 / VQDNA
  [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling
  ☆10Updated last year
• bytedance / dplm
  The Family of Diffusion Protein Language Models (DPLM)
  ☆292Updated 4 months ago
• PKU-YuanGroup / TaxDiff
  The official code for "TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation"
  ☆72Updated last year
• ljh0v0 / D3PM-Pytorch
  Unofficial PyTorch implementation of Discrete Denoising Diffusion Probabilistic Model(D3PM)
  ☆40Updated 2 years ago
• aim-uofa / BA-DDG
  [ICLR 2025 Spotlight] Boltzmann-Aligned Inverse Folding Model as a Predictor of Mutational Effects on Protein-Protein Interactions
  ☆42Updated 9 months ago
• xiaoxiaokuye / ICML_2024_ai4sci_paper
  ☆10Updated last year
• PKU-YuanGroup / ProLLaMA
  A Protein Large Language Model for Multi-Task Protein Language Processing
  ☆203Updated 2 months ago
• aim-uofa / VFN
  [ICLR 2024 Spotlight] The official repo for the paper "De novo Protein Design using Geometric Vector Field Networks".
  ☆30Updated last year
• ChenyuWang-Monica / DRAKES
  Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"
  ☆63Updated 7 months ago
• A4Bio / RDesign
  The official implementation of the ICLR'24 paper RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-base…
  ☆51Updated last year
• zangzelin / code_Must
  ☆31Updated last year
• A4Bio / ProteinInvBench
  The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics
  ☆196Updated last year
• GLAD-RUC / GGNN4Science
  ☆137Updated 6 months ago
• zangzelin / code_dmtme
  ☆27Updated 4 months ago
• ykiiiiii / GraDe_IF
  Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
  ☆69Updated last year
• ML-GSAI / BFN-Solver
  Official PyTorch implementation for "Unifying Bayesian Flow Networks and Diffusion Models through Stochastic Differential Equations"
  ☆41Updated last year
• A4Bio / PiFold
  The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.
  ☆179Updated 2 years ago
• terry-r123 / RNABenchmark
  [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
  ☆56Updated last year
• dongzhuoyao / awesome-flow-matching
  A summary of related works about flow matching, stochastic interpolants
  ☆615Updated 8 months ago
• UNITES-Lab / CryoNeRF
  ☆19Updated 7 months ago
• KrzakalaPaul / Any2Graph
  ☆12Updated 8 months ago
• VinAIResearch / LFM
  Official PyTorch implementation of the paper: Flow Matching in Latent Space
  ☆320Updated 11 months ago
• johndpope / Simplified-Diffusion-Schrodinger-Bridge
  ☆44Updated last year
• Yijia-Xiao / Protein-LLM-Survey
  Large Language Models in Protein: A Comprehensive Survey
  ☆162Updated 8 months ago
• MBZUAI / AI4Bio-Reading-List
  Must-read papers on AI for Biology
  ☆23Updated 2 years ago
• dptech-corp / Uni-3DAR
  Implementation of paper "Uni-3DAR: Unified 3D Generation and Understanding via Autoregression on Compressed Spatial Tokens"
  ☆138Updated 8 months ago
• RingBDStack / HypDiff
  This repository is the official implementation of "Hyperbolic Geometric Latent Diffusion Model for Graph Generation (HypDiff)" accepted b…
  ☆31Updated last year
• WestlakeAI / DrugGPT
  ☆11Updated 2 years ago
• jzhoulab / ddsm
  Dirichlet Diffusion Score Model for Biological Sequence Generation.
  ☆63Updated 10 months ago