bioturing-org / turing_segmentLinks
BioTuring Cell Segmentation
☆8Updated 4 months ago
Alternatives and similar repositories for turing_segment
Users that are interested in turing_segment are comparing it to the libraries listed below
Sorting:
- Interactive visualization of spatial omics data☆64Updated this week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆47Updated 3 weeks ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆59Updated 2 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆29Updated last week
- ☆66Updated this week
- Python API and Jupyter widget for Vitessce☆50Updated last week
- ☆12Updated this week
- ☆17Updated 2 months ago
- Spatial Single-Cell Analysis Toolkit☆94Updated last month
- Find profile pairs and compute metrics between them.☆17Updated last month
- rna2seg☆17Updated 2 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆81Updated 2 weeks ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆36Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated last month
- A pipeline to transform images into valuable analysis items☆13Updated last month
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated last month
- a python module to download Broad Bioimage Benchmark Collection images☆24Updated 6 years ago
- Minimum Information about Tissue Imaging☆20Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.☆24Updated last month
- A plugin to visualise 3D spatial single cell omics☆22Updated last month
- Slides and Notebooks for scverse 2024☆17Updated 10 months ago
- Integrated pipeline for multiplexed image analysis☆93Updated 4 months ago
- A toolkit for processing multiplexed tissue images☆62Updated this week
- Single-cell spatial proteomics analysis that makes you happy!☆34Updated this week
- Static plotting for spatialdata☆63Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- ☆18Updated last year
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 2 months ago