bioturing-org / turing_segment
BioTuring Cell Segmentation
☆8Updated last month
Alternatives and similar repositories for turing_segment:
Users that are interested in turing_segment are comparing it to the libraries listed below
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 2 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆17Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆42Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 10 months ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Minimum Information about Tissue Imaging☆20Updated last year
- ☆17Updated last month
- Spatial Single-Cell Analysis Toolkit☆90Updated this week
- Interactive visualization of spatial omics data☆53Updated this week
- A plugin to visualise 3D spatial single cell omics☆22Updated last year
- ☆30Updated 11 months ago
- Find profile pairs and compute metrics between them.☆12Updated last month
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated last week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Python API and Jupyter widget for Vitessce☆44Updated this week
- ☆17Updated last year
- Python package for reading imaging mass cytometry (IMC) files☆14Updated this week
- ☆32Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆77Updated 3 weeks ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆15Updated 3 weeks ago
- Single-cell spatial proteomics analysis that makes you happy!☆26Updated this week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆53Updated 2 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated 2 months ago
- RAnking Markers for CEll Segmentation☆11Updated 3 years ago
- ☆59Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆21Updated 8 months ago
- Learn morphological states of dynamic cells☆12Updated 2 years ago
- ☆13Updated this week
- Predicting Cell Health with Morphological Profiles☆36Updated 3 years ago
- Toolbox for the analysis of smFISH images.☆59Updated last year