bioturing-org / turing_segmentLinks
BioTuring Cell Segmentation
☆11Updated 10 months ago
Alternatives and similar repositories for turing_segment
Users that are interested in turing_segment are comparing it to the libraries listed below
Sorting:
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated this week
- ☆29Updated last year
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆30Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- Spatial Single-Cell Analysis Toolkit☆108Updated last month
- Interactive visualization of spatial omics data☆75Updated this week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆66Updated 7 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆105Updated last week
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 7 months ago
- Python API and Jupyter widget for Vitessce☆61Updated last week
- ☆65Updated last week
- ☆88Updated this week
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated 7 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆30Updated 8 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 4 months ago
- Histology Topography Cytometry Analysis Toolbox☆69Updated 3 months ago
- A pipeline to transform images into valuable analysis items☆18Updated 7 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 2 months ago
- A toolkit for processing multiplexed tissue images☆67Updated 2 weeks ago
- Toolbox for the analysis of smFISH images.☆73Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 3 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆84Updated 2 weeks ago
- Multimodal Data (.h5mu) implementation for Python☆107Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Updated 2 months ago
- Image Mass Cytometry analysis pipeline☆26Updated 8 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- ☆14Updated last month