Alternatives and similar repositories for DeltaDock

Users that are interested in DeltaDock are comparing it to the libraries listed below

• OdinZhang / FragGen
  This Code is for Fragment-wise 3D Structure-based Molecular Generation with Reliable Geometry
  ☆24Updated last month
• Zhang-Runze / PackDock
  PackDock: a Diffusion Based Side Chain Packing Model for Flexible Protein-Ligand Docking
  ☆34Updated 7 months ago
• SigmaGenX / TamGen
  ☆33Updated 5 months ago
• jiaxianyan / BioMiner
  BioMiner: A Multi-modal System for Automated Mining of Protein-Ligand Bioactivity Data from Literature
  ☆37Updated last week
• j9650 / MedusaGraph
  ☆28Updated 2 years ago
• MatthewMasters / EDM-Dock
  ☆32Updated 2 years ago
• akiyamalab / cycpeptmp
  Implementation of CycPeptMP, an accurate and efficient model for predicting the membrane permeability of cyclic peptides
  ☆21Updated this week
• iipharma / transpharmer-repo
  ☆33Updated last month
• kad-ecoli / mmCIF2BioLiP
  BioLiP2 database curation and web interface
  ☆25Updated 2 months ago
• pengxingang / PocketXMol
  Implementation of PocketXMol, the pocket-interacting molecular generative foundation model.
  ☆38Updated 2 weeks ago
• tiantz17 / PocketAnchor
  Learning Structure-based Pocket Representations for Protein-Ligand Interaction Prediction
  ☆33Updated last year
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 2 months ago
• VicFisher / DiffPhore
  Knowledge-Guided Diffusion Model for 3D Ligand-Pharmacophore Mapping
  ☆33Updated 2 weeks ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆59Updated last year
• tiejundong / FlexPose
  FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.
  ☆54Updated last year
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆49Updated 5 months ago
• ComputArtCMCG / PLANET
  ☆58Updated last year
• stonewiseAIDrugDesign / Lingo3DMol
  ☆54Updated last year
• Gonglab-THU / GeoStab
  ☆32Updated 6 months ago
• zaixizhang / PocketFlow
  Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"
  ☆13Updated 7 months ago
• fengyuewuya / EquiPocket
  ☆26Updated 6 months ago
• plainerman / DiffDock-Pocket
  Implementation of DiffDock-Pocket: Diffusion for Pocket-Level Docking with Side Chain Flexibility
  ☆31Updated 9 months ago
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆44Updated 3 months ago
• zjujdj / InteractionGraphNet
  InteractionGraphNet: a Novel and Efficient Deep Graph Representation Learning Framework for Accurate Protein-Ligand Interaction Predictio…
  ☆44Updated last year
• EureKaZhu / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆35Updated last year
• PKUGaoGroup / DSDP
  Deep Site and Docking Pose (DSDP) is a blind docking strategy accelerated by GPUs, developed by Gao Group. For the site prediction part, …
  ☆57Updated 6 months ago
• sun-heqi / MultiPPIMI
  A deep learning framework for predicting interactions between protein-protein interaction targets and modulators
  ☆14Updated last year
• drorlab / FRAME
  Fragment-based Molecular Expansion
  ☆20Updated last year
• bytedance / DecompOpt
  ☆10Updated 6 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆47Updated 5 months ago