Rhoana / rhoanaLinks
Rhoana - Dense Automated Neuron Annotation pipeline
☆29Updated 8 years ago
Alternatives and similar repositories for rhoana
Users that are interested in rhoana are comparing it to the libraries listed below
Sorting:
- Automatic segmentation of electron microscopy volumes☆78Updated 5 years ago
- Documentations of BigNeuron Project progress☆24Updated 9 years ago
- Tool for graph-based image segmentation and analysis☆22Updated 8 years ago
- Semi automated image analysis toolkit for Connectomics☆12Updated 6 years ago
- Aligner for large scale serial section image data☆16Updated 2 years ago
- ☆51Updated 7 years ago
- Python library for creating flow networks and computing the maxflow/mincut (aka graph-cuts for Python)☆255Updated last year
- A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.☆45Updated last year
- Automatic segmentation of electron microscopy volumes☆30Updated 13 years ago
- Flood-Filling Networks for instance segmentation in 3d volumes.☆343Updated 2 weeks ago
- Matlab implementation of continuous max flow variants☆21Updated 9 years ago
- A general illumination correction method for optical microscopy.☆42Updated 4 years ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆28Updated 7 years ago
- GPU accelerated volume rendering / processing in Python☆120Updated 6 years ago
- ilastik-shell, applets, and workflows to string them together.☆388Updated this week
- Chan-Vese level-sets in Python☆94Updated 4 years ago
- A curated list of Python projects for non-rigid (i.e. elastic) image registration☆32Updated last year
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Updated 2 years ago
- TensorFlow Deconvolution for Microscopy Data☆91Updated 3 years ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆25Updated 3 years ago
- This repository contains python implementations on Low-rank-plus-sparse, Atlas-to-image Registration (pyLAR) framework and its applicatio…☆23Updated 8 years ago
- Software package for neuron reconstruction and visualization☆40Updated 8 months ago
- PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…☆18Updated 5 years ago
- Variational Time-Implicit LevelSets for Image Segmentation☆13Updated 10 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Updated last year
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Deprecated: Read and write image data from and to TIFF files.☆62Updated 7 years ago
- A nifty library for graph based image segmentation.☆47Updated 8 months ago
- Automatic cell detection in microscopy data using convolutional networks☆34Updated 3 years ago
- ☆40Updated 5 years ago