Alternatives and similar repositories for rhoana

Users that are interested in rhoana are comparing it to the libraries listed below

• janelia-flyem / gala
  Automatic segmentation of electron microscopy volumes
  ☆77Updated 4 years ago
• BigNeuron / BigNeuron-Wiki
  Documentations of BigNeuron Project progress
  ☆24Updated 9 years ago
• jni / ray
  Automatic segmentation of electron microscopy volumes
  ☆31Updated 12 years ago
• janelia-flyem / NeuroProof
  Tool for graph-based image segmentation and analysis
  ☆21Updated 7 years ago
• ASETS / asetsMatlabMaxFlow
  Matlab implementation of continuous max flow variants
  ☆21Updated 8 years ago
• CovertLab / DeepCell
  ☆49Updated 7 years ago
• DerThorsten / nifty
  A nifty library for graph based image segmentation.
  ☆45Updated 2 months ago
• blink1073 / tifffile
  Deprecated: Read and write image data from and to TIFF files.
  ☆62Updated 6 years ago
• NoahApthorpe / ConvnetCellDetection
  Automatic cell detection in microscopy data using convolutional networks
  ☆33Updated 2 years ago
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆83Updated last week
• hammerlab / flowdec
  TensorFlow Deconvolution for Microscopy Data
  ☆90Updated 3 years ago
• funkey / nyroglancer
  jupyter notebook extension to visualize numpy arrays with the neuroglancer
  ☆27Updated 6 years ago
• billkarsh / Alignment_Projects
  Aligner for large scale serial section image data
  ☆16Updated 2 years ago
• ELEKTRONN / ELEKTRONN
  A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)
  ☆39Updated 3 years ago
• CellCognition / cecog
  A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.
  ☆44Updated last year
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆69Updated 2 years ago
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆79Updated 7 years ago
• mhlabCodingTeam / SegEM
  Semi automated image analysis toolkit for Connectomics
  ☆12Updated 5 years ago
• janelia-flyem / NeuTu
  Software package for neuron reconstruction and visualization
  ☆38Updated last month
• dtward / image-registration-summer-school-2018
  Python notebooks and data for learning about image registration. Hosted at a summer school
  ☆9Updated 7 years ago
• pmneila / PyMaxflow
  Python library for creating flow networks and computing the maxflow/mincut (aka graph-cuts for Python)
  ☆249Updated 7 months ago
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆41Updated 3 years ago
• CSBDeep / CSBDeep_website
  ☆40Updated 5 years ago
• maweigert / spimagine
  GPU accelerated volume rendering / processing in Python
  ☆119Updated 6 years ago
• AdaptiveParticles / LibAPR
  Library for producing and processing on the Adaptive Particle Representation (APR).
  ☆49Updated 3 months ago
• urakubo / UNI-EM
  A unified environment for DNN-based automated segmentation of neuronal EM images
  ☆37Updated 10 months ago
• kevin-keraudren / chanvese
  Chan-Vese level-sets in Python
  ☆94Updated 4 years ago
• adwanner / PyKNOSSOS
  PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…
  ☆18Updated 5 years ago