Rhoana / rhoana
Rhoana - Dense Automated Neuron Annotation pipeline
☆28Updated 7 years ago
Alternatives and similar repositories for rhoana:
Users that are interested in rhoana are comparing it to the libraries listed below
- Automatic segmentation of electron microscopy volumes☆76Updated 4 years ago
- Aligner for large scale serial section image data☆15Updated last year
- Documentations of BigNeuron Project progress☆24Updated 9 years ago
- ☆40Updated 5 years ago
- Tool for graph-based image segmentation and analysis☆21Updated 7 years ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.☆43Updated 8 months ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆28Updated 6 years ago
- A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)☆38Updated 3 years ago
- A library to facilitate machine learning on multi-dimensional images.☆81Updated this week
- Software package for neuron reconstruction and visualization☆38Updated 11 months ago
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆83Updated last year
- Matlab implementation of continuous max flow variants☆21Updated 8 years ago
- Automatic cell detection in microscopy data using convolutional networks☆33Updated 2 years ago
- A general illumination correction method for optical microscopy.☆39Updated 3 years ago
- Automatic segmentation of electron microscopy volumes☆31Updated 12 years ago
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆74Updated last week
- www.vaa3d.org☆79Updated 6 years ago
- Semi automated image analysis toolkit for Connectomics☆12Updated 5 years ago
- PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…☆18Updated 4 years ago
- Deprecated: Read and write image data from and to TIFF files.☆61Updated 6 years ago
- TensorFlow-based classifier for microscope image focus quality.☆17Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- ☆49Updated 6 years ago
- Library for producing and processing on the Adaptive Particle Representation (APR).☆48Updated 4 months ago
- Distributed segmentation for bio-image-analysis☆36Updated 8 months ago
- ImageJ plugin for morphological data mining, 3D modeling and image stitching, registration, editing and annotation.☆31Updated 5 months ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆67Updated 2 years ago
- GPU accelerated volume rendering / processing in Python☆118Updated 5 years ago
- This repository contains python implementations on Low-rank-plus-sparse, Atlas-to-image Registration (pyLAR) framework and its applicatio…☆22Updated 8 years ago