Alternatives and similar repositories for snps

Users that are interested in snps are comparing it to the libraries listed below

• plantimals / 2vcf
  convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations
  ☆58Updated 6 years ago
• apriha / lineage
  tools for genetic genealogy and the analysis of consumer DNA test results
  ☆167Updated 2 months ago
• brentp / peddy
  genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
  ☆142Updated 2 months ago
• AndersenLab / VCF-kit
  VCF-kit: Assorted utilities for the variant call format
  ☆130Updated 3 months ago
• EBIvariation / vcf-validator
  Validation suite for Variant Call Format (VCF) files, implemented using C++11
  ☆137Updated 2 months ago
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆129Updated last week
• mitoNGS / MToolBox
  A bioinformatics pipeline to analyze mtDNA from NGS data
  ☆96Updated last year
• arvkevi / ezancestry
  Easy genetic ancestry predictions in Python
  ☆64Updated 3 months ago
• KalinNonchev / gnomAD_DB
  This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor …
  ☆49Updated 3 months ago
• seppinho / haplogrep-cmd
  HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
  ☆76Updated 2 years ago
• ncbi / ncbi-vdb
  ncbi-vdb
  ☆91Updated last week
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆63Updated 9 years ago
• statgen / Minimac4
  ☆67Updated 4 months ago
• lh3 / readfq
  Fast multi-line FASTA/Q reader in several programming languages
  ☆176Updated 4 years ago
• AI-sandbox / gnomix
  A fast, scalable, and accurate local ancestry method.
  ☆102Updated last year
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆171Updated last year
• DecodeGenetics / graphtyper
  Population-scale genotyping using pangenome graphs
  ☆192Updated 9 months ago
• ga4gh / data-repository-service-schemas
  A repository for the schemas used for the Data Repository Service.
  ☆63Updated 2 months ago
• genometools / genometools
  GenomeTools genome analysis system.
  ☆325Updated last week
• pgxcentre / genipe
  Genome-wide imputation pipeline
  ☆31Updated last year
• stevenliuyi / admix
  an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.
  ☆71Updated 3 years ago
• bihealth / vcfpy
  Python 3 library with good support for both reading and writing VCF
  ☆109Updated last week
• GoekeLab / xpore
  Identification of differential RNA modifications from nanopore direct RNA sequencing
  ☆158Updated 11 months ago
• Illumina / Nirvana
  The nimble & robust variant annotator
  ☆185Updated last year
• 23andMe / yhaplo
  Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men
  ☆111Updated 2 months ago
• 0xTCG / aldy
  Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
  ☆64Updated 2 months ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆84Updated last month
• BoevaLab / FREEC
  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
  ☆171Updated last year
• Illumina / akt
  Ancestry and Kinship Tools
  ☆70Updated 2 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆60Updated last week