Alternatives and similar repositories for snps

Users that are interested in snps are comparing it to the libraries listed below

• apriha / lineage
  tools for genetic genealogy and the analysis of consumer DNA test results
  ☆169Updated 4 months ago
• plantimals / 2vcf
  convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations
  ☆59Updated 6 years ago
• plashchynski / awesome-genetics
  A curated list of awesome personal genomics software, libraries, and educational resources.
  ☆143Updated last year
• ncbi / dbsnp
  dbSNP
  ☆141Updated last year
• 0xTCG / aldy
  Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
  ☆64Updated last month
• brentp / peddy
  genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
  ☆144Updated 4 months ago
• Illumina / akt
  Ancestry and Kinship Tools
  ☆70Updated 3 years ago
• ncbi / ncbi-vdb
  ncbi-vdb
  ☆92Updated last week
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆60Updated last week
• bihealth / vcfpy
  Python 3 library with good support for both reading and writing VCF
  ☆110Updated last month
• seppinho / haplogrep-cmd
  HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
  ☆78Updated 2 years ago
• statgen / Minimac4
  ☆72Updated 5 months ago
• arvkevi / ezancestry
  Easy genetic ancestry predictions in Python
  ☆65Updated 5 months ago
• zwdzwd / transvar
  TransVar - multiway annotator for precision medicine
  ☆126Updated 2 years ago
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆138Updated last week
• Illumina / Nirvana
  The nimble & robust variant annotator
  ☆188Updated last year
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆71Updated last month
• yjx1217 / simuG
  simuG: a general-purpose genome simulator
  ☆96Updated 5 months ago
• nf-core / raredisease
  Call and score variants from WGS/WES of rare disease patients.
  ☆112Updated this week
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆84Updated 3 months ago
• stevenliuyi / admix
  an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.
  ☆71Updated 3 years ago
• broadinstitute / gnomad-browser
  Explore gnomAD datasets on the web
  ☆85Updated this week
• mitoNGS / MToolBox
  A bioinformatics pipeline to analyze mtDNA from NGS data
  ☆97Updated last year
• openvar / variantValidator
  Public repository for VariantValidator project
  ☆78Updated 2 weeks ago
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆103Updated 2 weeks ago
• cobilab / cryfa
  A secure encryption tool for genomic data
  ☆62Updated last year
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆63Updated 9 years ago
• AI-sandbox / gnomix
  A fast, scalable, and accurate local ancestry method.
  ☆105Updated last year
• broadinstitute / seqr
  web-based analysis tool for rare disease genomics
  ☆195Updated this week
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 4 years ago