Alternatives and similar repositories for snps

Users that are interested in snps are comparing it to the libraries listed below

• apriha / lineage
  tools for genetic genealogy and the analysis of consumer DNA test results
  ☆169Updated 2 months ago
• plantimals / 2vcf
  convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations
  ☆58Updated 6 years ago
• brentp / peddy
  genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
  ☆142Updated 2 months ago
• ncbi / dbsnp
  dbSNP
  ☆141Updated last year
• ncbi / ncbi-vdb
  ncbi-vdb
  ☆92Updated this week
• plashchynski / awesome-genetics
  A curated list of awesome personal genomics software, libraries, and educational resources.
  ☆138Updated last year
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆60Updated 3 weeks ago
• statgen / Minimac4
  ☆66Updated 3 months ago
• 0xTCG / aldy
  Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
  ☆64Updated last month
• broadinstitute / gnomad-browser
  Explore gnomAD datasets on the web
  ☆84Updated this week
• KalinNonchev / gnomAD_DB
  This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor …
  ☆48Updated 3 months ago
• exomiser / Exomiser
  A Tool to Annotate and Prioritize Exome Variants
  ☆226Updated 3 weeks ago
• arvkevi / ezancestry
  Easy genetic ancestry predictions in Python
  ☆65Updated 3 months ago
• stevenliuyi / admix
  an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.
  ☆68Updated 3 years ago
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆77Updated 7 months ago
• Illumina / Nirvana
  The nimble & robust variant annotator
  ☆185Updated last year
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆84Updated last month
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆63Updated 9 years ago
• nf-core / raredisease
  Call and score variants from WGS/WES of rare disease patients.
  ☆109Updated last week
• igvteam / igv-webapp
  IGV Web App
  ☆124Updated last month
• dnanexus / dxCompiler
  WDL and CWL compiler for the DNAnexus platform
  ☆34Updated this week
• mitoNGS / MToolBox
  A bioinformatics pipeline to analyze mtDNA from NGS data
  ☆95Updated last year
• DecodeGenetics / graphtyper
  Population-scale genotyping using pangenome graphs
  ☆190Updated 8 months ago
• imgag / megSAP
  a Medical Genetics Sequence Analysis Pipeline
  ☆84Updated last week
• nf-core / hic
  Analysis of Chromosome Conformation Capture data (Hi-C)
  ☆101Updated 2 months ago
• openvar / variantValidator
  Public repository for VariantValidator project
  ☆77Updated 2 weeks ago
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆168Updated last year
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆148Updated last week
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆127Updated 2 weeks ago
• Illumina / akt
  Ancestry and Kinship Tools
  ☆70Updated 2 years ago