Alternatives and similar repositories for admix

Users that are interested in admix are comparing it to the libraries listed below

• seppinho / haplogrep-cmd
  HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
  ☆77Updated 2 years ago
• Illumina / akt
  Ancestry and Kinship Tools
  ☆70Updated 3 years ago
• Illumina / Polaris
  Data and information about the Polaris study
  ☆55Updated 6 years ago
• human-pangenomics / hpgp-data
  Data from the Human PanGenomics Project
  ☆61Updated 4 years ago
• imgag / ClinCNV
  Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
  ☆91Updated 4 months ago
• EI-CoreBioinformatics / mikado
  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…
  ☆106Updated this week
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆75Updated 6 years ago
• Illumina / ExpansionHunterDenovo
  A suite of tools for detecting expansions of short tandem repeats
  ☆84Updated 2 years ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆99Updated last year
• igsr / 1000Genomes_data_indexes
  The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource
  ☆47Updated 6 years ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆81Updated last year
• CSB5 / lofreq
  LoFreq Star: Sensitive variant calling from sequencing data
  ☆110Updated 3 months ago
• statgen / bamUtil
  ☆92Updated 4 years ago
• svviz / svviz
  Read visualizer for structural variants
  ☆84Updated 7 years ago
• imgag / megSAP
  a Medical Genetics Sequence Analysis Pipeline
  ☆85Updated last week
• ncbi / dbvar
  dbVar
  ☆40Updated 3 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated 8 months ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆92Updated 5 years ago
• cbg-ethz / shorah
  Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)
  ☆41Updated 2 years ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• mozack / abra2
  ABRA2
  ☆95Updated 3 years ago
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆175Updated last year
• Illumina / SMNCopyNumberCaller
  A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS
  ☆51Updated 2 years ago
• ultimatesource / denovogear
  A program to detect denovo-variants using next-generation sequencing data.
  ☆55Updated 5 years ago
• bcgsc / biobloom
  Create Bloom filters for a given reference and then use it to categorize sequences
  ☆76Updated last year
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆103Updated 5 years ago
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆107Updated 5 years ago
• Illumina / paragraph
  Graph realignment tools for structural variants
  ☆165Updated 3 years ago
• Sentieon / sentieon-scripts
  Helper scripts for biological data processing from Sentieon
  ☆64Updated this week
• MikkelSchubert / adapterremoval
  AdapterRemoval v2 - rapid adapter trimming, identification, and read merging
  ☆114Updated this week