bioinformatics-core-shared-training / cruk-summer-school-2017
Analysis of Cancer Genomes; 2017 edition
☆15Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for cruk-summer-school-2017
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆29Updated 11 months ago
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- Summer school course materials collection☆25Updated 6 years ago
- An R interface to the MEME Suite☆46Updated last month
- Workshop • Analysis of RNA-seq data☆34Updated 8 months ago
- a tool for summarizing and integrating gene-set analysis results☆16Updated 3 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- ATAC-seq lab for BIOINF545☆25Updated 8 months ago
- ☆46Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 3 months ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 5 years ago
- ☆40Updated 6 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆41Updated last year
- Merge fastq files split over lanes☆19Updated 6 years ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated 6 months ago
- ☆17Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆69Updated 6 months ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆49Updated 2 years ago
- workshop website on readthedocs☆19Updated last week
- Scripts to import your FeatureCounts output into DEXSeq☆31Updated 6 years ago
- An R package to analyze single-cell V(D)J data☆24Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆85Updated 3 months ago
- ☆53Updated 3 years ago
- An R for fast and flexible DNA methylation analysis☆30Updated 4 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- ☆37Updated 4 years ago