Edinburgh-Genome-Foundry/CUBA external links

---

GitHub - View repository

GitHub.dev - Open in online code editor

Star history - Growth chart over time

deps.dev - Dependencies and security vulnerabilities

Gitingest - Export source code for LLM usage

Repomix - Export source code for LLM usage

uithub - Export source code for LLM usage

Close

Edinburgh-Genome-Foundry/CUBA

Readme badge preview -

If you own this repo, copy the snippet below and add it to your README.md

---

Copy

[![RelatedRepos](https://img.shields.io/badge/related-repos-yellow)](https://relatedrepos.com/gh/Edinburgh-Genome-Foundry/CUBA)

Close

Edinburgh-Genome-Foundry / CUBAView on GitHubMore

• External links
• Readme badge

🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software

☆20Dec 10, 2022Updated 3 years ago

Alternatives and similar repositories for CUBA

Users that are interested in CUBA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.

• Edinburgh-Genome-Foundry / BandWitch

  View on GitHub
  💫 Computer-aided DNA assembly validation and identification from restriction digests.
  ☆15May 29, 2025Updated 11 months ago
• Edinburgh-Genome-Foundry / kappagate

  View on GitHub
  Predict DNA assembly clone validity rates - powered by Kappa
  ☆10Jul 24, 2020Updated 5 years ago
• Edinburgh-Genome-Foundry / SBOL-Visual-CSS

  View on GitHub
  Draw genetic elements with HTML & CSS
  ☆17Apr 3, 2026Updated last month
• Edinburgh-Genome-Foundry / BandWagon

  View on GitHub
  🎺 Plot DNA digestion band patterns with Python
  ☆20May 12, 2025Updated 11 months ago
• Edinburgh-Genome-Foundry / DnaWeaver

  View on GitHub
  A route planner for DNA assembly
  ☆37May 12, 2025Updated 11 months ago
• 1-Click AI Models by DigitalOcean Gradient • Ad
  Deploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
• Edinburgh-Genome-Foundry / DnaCauldron

  View on GitHub
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆66May 12, 2025Updated 11 months ago
• Edinburgh-Genome-Foundry / genome_collector

  View on GitHub
  Easily download genomes and build BLAST/Bowtie indexes in Python
  ☆22Sep 30, 2022Updated 3 years ago
• Edinburgh-Genome-Foundry / Primavera

  View on GitHub
  Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
  ☆32Apr 9, 2025Updated last year
• Edinburgh-Genome-Foundry / genedom

  View on GitHub
  Batch domestication of genetic parts with Python
  ☆16May 12, 2025Updated 11 months ago
• Edinburgh-Genome-Foundry / tatapov

  View on GitHub
  DNA overhang misannealing data for Python
  ☆13May 15, 2025Updated 11 months ago
• Edinburgh-Genome-Foundry / Caravagene

  View on GitHub
  🎨 Python library to plot multi-part genetic constructs
  ☆26Apr 9, 2025Updated last year
• Edinburgh-Genome-Foundry / CAB

  View on GitHub
  The friendly Computational App Boilerplate. Django + Vue.JS + Redis queues + NginX
  ☆22Jun 10, 2021Updated 4 years ago
• Edinburgh-Genome-Foundry / crazydoc

  View on GitHub
  Read DNA sequences from colourful Microsoft Word documents
  ☆34May 12, 2025Updated 11 months ago
• Edinburgh-Genome-Foundry / Geneblocks

  View on GitHub
  Find common blocks and differences between DNA sequences
  ☆44Nov 5, 2025Updated 5 months ago
• Wordpress hosting with auto-scaling - Free Trial Offer • Ad
  Fully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
• Edinburgh-Genome-Foundry / GoldenHinges

  View on GitHub
  Short overhangs design for DNA assembly
  ☆15Jun 8, 2022Updated 3 years ago
• mauriceling / advancesyntoolkit

  View on GitHub
  Toolkit for Modelling and Simulation of Gene Expressions and Metabolism
  ☆13Apr 1, 2026Updated last month
• Edinburgh-Genome-Foundry / sequenticon

  View on GitHub
  Generate identicons for DNA sequences with Python
  ☆38May 8, 2025Updated 11 months ago
• Edinburgh-Genome-Foundry / DnaChisel

  View on GitHub
  A versatile DNA sequence optimizer
  ☆269Nov 5, 2025Updated 5 months ago
• Amyris / GslCore

  View on GitHub
  Core library and basic plug-ins for the Amyris Genotype Specification Language (GSL) compiler.
  ☆24Apr 5, 2023Updated 3 years ago
• Gardner-BinfLab / TISIGNER-ReactJS

  View on GitHub
  TISIGNER: Unleash the power of synthetic biology
  ☆30May 24, 2025Updated 11 months ago
• TeselaGen / ve-sequence-parsers-DEPRECATED

  View on GitHub
  Convert genbank, fasta, sbol to JSON and back again!
  ☆34Jun 5, 2023Updated 2 years ago
• stracquadaniolab / pygna

  View on GitHub
  A Python package for gene network analysis
  ☆32Jun 22, 2022Updated 3 years ago
• LabMolUFG / automated-qsar-framework

  View on GitHub
  Automated framework for the curation of chemogenomics data and to develop QSAR models for virtual screening using the open-source KNIME s…
  ☆24Apr 14, 2020Updated 6 years ago
• Deploy to Railway using AI coding agents - Free Credits Offer • Ad
  Use Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
• DoruMP / Fast-data-portals-for-scRNAseq-data

  View on GitHub
  ☆13May 14, 2019Updated 6 years ago
• jensengroup / fragbuilder

  View on GitHub
  fragbuilder is a tool to create, setup and analyze QM calculations on peptides.
  ☆15Oct 31, 2014Updated 11 years ago
• compbiol / CAMSA

  View on GitHub
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆25Apr 13, 2020Updated 6 years ago
• JBEI / ice

  View on GitHub
  Web based Registry platform for managing synthetic biological parts
  ☆42May 16, 2024Updated last year
• NutritionalLungImmunity / nlisim

  View on GitHub
  ☆11Feb 11, 2023Updated 3 years ago
• jteutenberg / downpore

  View on GitHub
  Suite of tools for use in genome assembly and consensus. Work in progress.
  ☆31Mar 22, 2021Updated 5 years ago
• goeckslab / Galaxy-ML

  View on GitHub
  Make machine learning simpler with Galaxy
  ☆12Jul 16, 2024Updated last year
• benchling / integration-examples

  View on GitHub
  Example usage of the Benchling API: https://docs.benchling.com/
  ☆36Jun 10, 2025Updated 10 months ago
• Edinburgh-Genome-Foundry / DnaFeaturesViewer

  View on GitHub
  Python library to plot DNA sequence features (e.g. from Genbank files)
  ☆689Jul 2, 2025Updated 10 months ago
• Deploy to Railway using AI coding agents - Free Credits Offer • Ad
  Use Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
• chadlaing / Panseq

  View on GitHub
  Pan-genomic sequence analysis
  ☆46Jul 11, 2022Updated 3 years ago
• zoecournia / FEPrepare

  View on GitHub
  ☆10May 17, 2021Updated 4 years ago
• maranasgroup / dGPredictor

  View on GitHub
  ☆10Dec 15, 2023Updated 2 years ago
• sdhutchins / labrat

  View on GitHub
  A basic science lab framework aimed at reproducibility and lab management.
  ☆14Mar 26, 2026Updated last month
• biosails / pheniqs

  View on GitHub
  Fast and accurate sequence demultiplexing
  ☆30Mar 18, 2026Updated last month
• igorChem / PRIMoRDiA1.0v

  View on GitHub
  PRIMoRDiA 1.0v source repository, executable built for Linux x86_64 machines and user guide
  ☆13Oct 18, 2023Updated 2 years ago
• dataprofessor / moldesc-app

  View on GitHub
  ☆15Nov 29, 2021Updated 4 years ago